View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8059_low_8 (Length: 323)

Name: NF8059_low_8
Description: NF8059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8059_low_8
NF8059_low_8
[»] chr1 (10 HSPs)
chr1 (1-305)||(46505185-46505491)
chr1 (91-178)||(41997785-41997872)
chr1 (91-176)||(17760767-17760852)
chr1 (76-172)||(3377569-3377665)
chr1 (76-176)||(16874649-16874749)
chr1 (76-176)||(50401439-50401538)
chr1 (76-179)||(23220634-23220737)
chr1 (76-142)||(39642388-39642454)
chr1 (76-176)||(46572894-46572992)
chr1 (76-164)||(49426151-49426238)
[»] chr8 (6 HSPs)
chr8 (76-176)||(29044693-29044793)
chr8 (75-176)||(23702281-23702382)
chr8 (76-142)||(37813271-37813337)
chr8 (91-175)||(3676275-3676359)
chr8 (76-172)||(21486722-21486818)
chr8 (91-179)||(25144025-25144113)
[»] chr3 (13 HSPs)
chr3 (76-176)||(33329763-33329863)
chr3 (76-179)||(8024925-8025028)
chr3 (76-176)||(43747426-43747526)
chr3 (76-176)||(44436544-44436644)
chr3 (76-142)||(38957914-38957980)
chr3 (76-176)||(51315630-51315730)
chr3 (76-142)||(54464230-54464296)
chr3 (91-176)||(86656-86741)
chr3 (91-172)||(4474151-4474231)
chr3 (261-298)||(25902609-25902646)
chr3 (91-176)||(36677657-36677742)
chr3 (91-176)||(36687737-36687822)
chr3 (91-179)||(38177259-38177347)
[»] chr5 (16 HSPs)
chr5 (76-179)||(22300668-22300771)
chr5 (76-176)||(20629890-20629990)
chr5 (76-176)||(27904629-27904729)
chr5 (76-179)||(32391862-32391965)
chr5 (91-142)||(37897898-37897949)
chr5 (77-179)||(2974702-2974804)
chr5 (76-176)||(20512264-20512364)
chr5 (92-176)||(26702519-26702603)
chr5 (92-176)||(26972252-26972336)
chr5 (91-179)||(36798254-36798341)
chr5 (88-175)||(3333848-3333935)
chr5 (76-179)||(40276172-40276275)
chr5 (193-251)||(40276086-40276144)
chr5 (75-172)||(28446071-28446168)
chr5 (193-298)||(36798364-36798469)
chr5 (91-179)||(35166378-35166466)
[»] chr2 (11 HSPs)
chr2 (75-172)||(44617889-44617986)
chr2 (91-179)||(37431626-37431714)
chr2 (76-179)||(5362318-5362422)
chr2 (95-172)||(27489519-27489596)
chr2 (75-142)||(14489280-14489347)
chr2 (76-135)||(34760915-34760974)
chr2 (91-176)||(34679180-34679265)
chr2 (76-136)||(4925507-4925567)
chr2 (76-176)||(5470483-5470583)
chr2 (270-298)||(39918455-39918483)
chr2 (91-175)||(43028876-43028960)
[»] chr7 (10 HSPs)
chr7 (91-179)||(15107135-15107223)
chr7 (76-176)||(28785901-28786001)
chr7 (75-179)||(44312886-44312989)
chr7 (79-176)||(18186597-18186694)
chr7 (90-179)||(28472469-28472558)
chr7 (91-179)||(36903345-36903433)
chr7 (75-140)||(17876236-17876301)
chr7 (91-172)||(41243725-41243806)
chr7 (76-176)||(18504311-18504411)
chr7 (76-172)||(36580425-36580521)
[»] chr6 (7 HSPs)
chr6 (25-179)||(6036803-6036959)
chr6 (76-140)||(2840990-2841054)
chr6 (91-176)||(26311550-26311635)
chr6 (75-151)||(32143325-32143401)
chr6 (75-134)||(6036711-6036770)
chr6 (76-179)||(30349416-30349519)
chr6 (75-172)||(266262-266358)
[»] chr4 (18 HSPs)
chr4 (91-176)||(14449430-14449515)
chr4 (76-176)||(1420690-1420790)
chr4 (91-179)||(6637206-6637294)
chr4 (91-179)||(12719588-12719676)
chr4 (76-171)||(51362607-51362702)
chr4 (76-173)||(10059846-10059943)
chr4 (76-176)||(21597548-21597648)
chr4 (75-135)||(44356585-44356645)
chr4 (76-171)||(2016859-2016954)
chr4 (75-142)||(27978758-27978825)
chr4 (76-142)||(14060883-14060949)
chr4 (126-179)||(6614987-6615040)
chr4 (91-176)||(43074734-43074819)
chr4 (76-176)||(2836967-2837067)
chr4 (270-298)||(19909194-19909222)
chr4 (271-299)||(21957559-21957587)
chr4 (76-140)||(23759756-23759820)
chr4 (270-298)||(44356662-44356690)
[»] scaffold0328 (1 HSPs)
scaffold0328 (76-176)||(9479-9579)
[»] scaffold0248 (1 HSPs)
scaffold0248 (91-172)||(486-567)
[»] scaffold0809 (1 HSPs)
scaffold0809 (271-299)||(3023-3051)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 46505491 - 46505185
Alignment:
Q  1 caattttttaaggcttaataataattttaggccctaacttttcgaaagttgcgattttttccctaagnnnnnnn-ttacaaaactgtcccataagttttg 99  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||        |||||||||||| ||||||||||||    
T  46505491 caattttttaaggcttaataataattttag-ccctaatttttcgaaagttgcgattttttccttaagaaaaaaagttacaaaactgttccataagttttg 46505393  T
Q  100 catttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg--nnnnnnnnatcataaatt 197  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||          ||||||||||    
T  46505392 catttgcggcagttctggcccccaagaccaattttggctcggtttacgttgacgtgacaccctaagtgaggtgccacatgttttttttttatcataaatt 46505293  T
Q  198 ggcattggggggctaaaaaagccacagttgcaaaacttagtggacgattgtgtag-nnnnnnnncttagtgatccaaaatcgcaactttgagaaagttag 296  Q
    | |||| |||||| ||||||||||||||||||||||||||||||||||| |||||         |||||||| |||||||||||||||||| ||| ||||    
T  46505292 gccatt-gggggccaaaaaagccacagttgcaaaacttagtggacgattttgtagtttttttttcttagtgacccaaaatcgcaactttgaaaaaattag 46505194  T
Q  297 ggacgaaaa 305  Q
    | |||||||    
T  46505193 gaacgaaaa 46505185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 41997872 - 41997785
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacat 178  Q
    |||| ||||||| || ||||||| ||||||||||| ||||||||| |||||| |||  |||| ||||| ||||| |||||||||||||    
T  41997872 taagctttgcatctgtggcagttttggcctccaaggccaattttgactcggtctacgctgacgtgacaccctaagtgaggtgccacat 41997785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 17760767 - 17760852
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    |||||||||||| || ||||||| ||||| |||||| |||||||| |||||| |||| |||| || || ||||| |||||||||||    
T  17760767 taagttttgcatatgtggcagttttggccaccaagatcaattttgactcggtctacactgacgtggcaccctaaatgaggtgccac 17760852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 3377569 - 3377665
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtg 172  Q
    |||||||| | ||| ||||||||||||||| ||||||| ||||| ||||| ||||||||| |||||| |||  |||| ||||  ||||| |||||||    
T  3377569 tacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtgacgccctaagtgaggtg 3377665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 16874749 - 16874649
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | |||||||||||||||| || ||||||| ||||  ||||| ||||||||| |||||| |||  |||| || || ||||| ||||||||||    
T  16874749 tacaaaaccgccccataagttttgcatctgtggcagttttggctcccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcca 16874650  T
Q  176 c 176  Q
    |    
T  16874649 c 16874649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 50401439 - 50401538
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| ||||||||||||||| | ||||| ||||| ||||| ||||||||| |||||| |||  |||| ||||| | ||| ||||||||||    
T  50401439 tacaaaaccgccccctaagttttgcatttgtgacagttttggcc-ccaaggccaattttgactcggtctactctgacgtgacaccttaaatgaggtgcca 50401537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 23220634 - 23220737
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| |||||||||||  || ||| ||| ||||| |||||||||||||||  ||||| |||  |||| || || ||||| ||||||||||    
T  23220634 tacaaaaccgccccttaagttttgcacatgtggcggttttggcccccaagaccaattttgattcggtctacgctgacgtggcaccctaagtgaggtgcca 23220733  T
Q  176 catg 179  Q
    ||||    
T  23220734 catg 23220737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 39642454 - 39642388
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggt 142  Q
    |||||||| | ||| ||||||||||||||| ||||||| ||||| ||||  ||||||||| ||||||    
T  39642454 tacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaaagccaattttgactcggt 39642388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 46572894 - 46572992
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| ||||| ||||||||||||||| ||||||| ||||| ||||| ||||||||| || ||| |||  |||  ||| | ||||| ||||||||||    
T  46572894 tacaaaaccgtcccctaagttttgcatttgtggcagtt-tggcc-ccaaggccaattttgacttggtctacgctgatgtgagaccctaagtgaggtgcca 46572991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 49426238 - 49426151
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaa 164  Q
    ||||||||||| || ||||||||||||||| ||||||| ||||| ||||  ||||||||| || ||| |||  |||| ||||| |||||    
T  49426238 tacaaaactgttccttaagttttgcatttgtggcagttttggcc-ccaatgccaattttgacttggtctacgctgacgtgacaccctaa 49426151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 29044793 - 29044693
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||| |||||| |||  |||| ||  | ||||| ||||||||||    
T  29044793 tacaaaactgtcccataagttttgcatttgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtggtaccctaaatgaggtgcca 29044694  T
Q  176 c 176  Q
    |    
T  29044693 c 29044693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 23702382 - 23702281
Alignment:
Q  75 ttacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcc 174  Q
    |||||||| |||||| ||||||||||||||| | ||||| |||||||||||  |||||||| ||| || ||   ||||||| || ||||| |||| ||||    
T  23702382 ttacaaaattgtcccctaagttttgcatttgtgacagttttggcctccaaggtcaattttgactcagtctatgctgacatggcaccctaagtgagatgcc 23702283  T
Q  175 ac 176  Q
    ||    
T  23702282 ac 23702281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 37813337 - 37813271
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggt 142  Q
    |||||||| | ||| |||||||||||| || ||||||| ||||| ||||| ||||||||| ||||||    
T  37813337 tacaaaaccgccccctaagttttgcatctgtggcagttttggcccccaaggccaattttgactcggt 37813271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 3676359 - 3676275
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||||||| || ||||||| ||| | |||| |||||||||| |||||| |||  |||| || || ||||| ||||||||||    
T  3676359 taagttttgcatctgtggcagttttggtccccaaaaccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcca 3676275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 21486722 - 21486818
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtg 172  Q
    |||||||| | ||| |||||||||||  || |||| || |||||||||||| |||||||| || ||| |||  |||| ||||| ||||| |||||||    
T  21486722 tacaaaaccgccccctaagttttgcacctgtggcatttttggcctccaagatcaattttgacttggtctacgctgacgtgacaccctaagtgaggtg 21486818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 25144025 - 25144113
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    |||||||||||| || ||||||| |||| |||||  ||||||||| ||||||||||  |||| |  || ||||| ||| ||||||||||    
T  25144025 taagttttgcatctgtggcagttttggcatccaaagccaattttgactcggtttacgctgacgttgcaccctaagtgatgtgccacatg 25144113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 33329863 - 33329763
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| ||||| ||||| ||||||||| ||||||| ||||| ||||||||||||||| |||||| |||  |||| || || ||||| ||||||||||    
T  33329863 tacaaaaccgtcccctaagtattgcatttgtggcagttttggcccccaagaccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcca 33329764  T
Q  176 c 176  Q
    |    
T  33329763 c 33329763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 8025028 - 8024925
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||  ||||| |||||||||||| || || |||| ||||||||||||||||||||  |||||| |||  |||| ||||||||||| |||||| |||    
T  8025028 tacaaaatcgtcccctaagttttgcatatgtggtagttttggcctccaagaccaattttaactcggtctacgctgacgtgacatcctaaatgaggtacca 8024929  T
Q  176 catg 179  Q
    ||||    
T  8024928 catg 8024925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 43747526 - 43747426
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| ||||||||||||||  ||||||| ||||| ||| || |||||||| |||||| |||  |||| || |||||||| ||||||||||    
T  43747526 tacaaaaccgccccctaagttttgcatttatggcagttttggcccccacgatcaattttgactcggtctacgctgacgtggcatcctaagtgaggtgcca 43747427  T
Q  176 c 176  Q
    |    
T  43747426 c 43747426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 44436644 - 44436544
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| |||||||||||| || ||||||| ||||| ||||| ||||||||| |||||| |||  |||| || || ||||| ||||||||||    
T  44436644 tacaaaaccgccccctaagttttgcatctgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcca 44436545  T
Q  176 c 176  Q
    |    
T  44436544 c 44436544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 38957914 - 38957980
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggt 142  Q
    |||||||| | ||| ||||||||||||||| ||||||| ||||| ||||| ||||||||| ||||||    
T  38957914 tacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaaggccaattttgactcggt 38957980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 51315730 - 51315630
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| |||||||||||  || ||||||| ||||| ||||| ||||||||| |||||| |||  |||| || || ||||| ||||||||||    
T  51315730 tacaaaaccgccccctaagttttgcacctgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcca 51315631  T
Q  176 c 176  Q
    |    
T  51315630 c 51315630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 54464230 - 54464296
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggt 142  Q
    |||||||||||||| |||||||||||| || ||||||| || || |||||  |||||||| ||||||    
T  54464230 tacaaaactgtcccctaagttttgcatatgtggcagttttgacccccaaggtcaattttgactcggt 54464296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 86656 - 86741
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    ||||||||||| |||  |||||| ||||| ||||||||||||||| |||| | |||  |||||||  | ||||| |||||||||||    
T  86656 taagttttgcacttgtagcagttttggcccccaagaccaattttgactcgatctacgctgacatgggaccctaagtgaggtgccac 86741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 4474151 - 4474231
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtg 172  Q
    ||||||||||||||| ||||||| || || | |||||||||||||  ||||| |||  |||||||||| ||||| |||||||    
T  4474151 taagttttgcatttgtggcagttttgacccctaagaccaattttgattcggtctacgctgacatgaca-cctaagtgaggtg 4474231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 25902609 - 25902646
Alignment:
Q  261 cttagtgatccaaaatcgcaactttgagaaagttaggg 298  Q
    ||||| || |||||||||||||||||||||||||||||    
T  25902609 cttagggagccaaaatcgcaactttgagaaagttaggg 25902646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 36677742 - 36677657
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    |||| |||||||||| |||| || |||||||||||  |||||||| ||||||||||  |||| || || | ||| |||||||||||    
T  36677742 taagatttgcatttgtggcaattttggcctccaaggtcaattttgactcggtttacgctgacgtggcaccttaagtgaggtgccac 36677657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 36687822 - 36687737
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    |||| |||||||||| |||| || ||||||||||   |||||||| ||||||||||  |||| || || ||||| |||||||||||    
T  36687822 taagatttgcatttgtggcaattttggcctccaatgtcaattttgactcggtttacgctgacgtggcaccctaagtgaggtgccac 36687737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 38177259 - 38177347
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    |||||||||||| || | || || ||||| ||||| ||||||||| |||||||| |  |||| || || ||||| ||||||||||||||    
T  38177259 taagttttgcatatgtgacatttttggcccccaaggccaattttgactcggtttgcgctgacgtggcaccctaagtgaggtgccacatg 38177347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 22300668 - 22300771
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| ||||| ||||||||| || || ||||||| || | |||||||||||||||| |||||| ||| ||||| || || ||||| ||||||||||    
T  22300668 tacaaaaccgtcccttaagttttgtatatgtggcagttttgacttccaagaccaattttgactcggtctacgttgacgtggcaccctaagtgaggtgcca 22300767  T
Q  176 catg 179  Q
    ||||    
T  22300768 catg 22300771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 20629990 - 20629890
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| ||||||||||||||| || |||| ||||||||| ||||||||||| |||| | |||  |||| || || ||||| ||||||||||    
T  20629990 tacaaaaccgccccctaagttttgcatttgtggaagttttggcctccaggaccaattttgactcgatctacgctgacgtggcaccctaagtgaggtgcca 20629891  T
Q  176 c 176  Q
    |    
T  20629890 c 20629890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 27904729 - 27904629
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| ||||||||||| ||| ||||||| || || ||||||||||||||| |||||| |||  |||| || || ||||| ||||||||||    
T  27904729 tacaaaaccgccccctaagttttgcacttgtggcagttttgtcccccaagaccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcca 27904630  T
Q  176 c 176  Q
    |    
T  27904629 c 27904629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 32391965 - 32391862
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| |||||||||||| || | ||||| || | |||||||||||||||| |||||| |||  |||| || || ||||| ||||||||||    
T  32391965 tacaaaaccgccccttaagttttgcatgtgtgacagttttgacatccaagaccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcca 32391866  T
Q  176 catg 179  Q
    ||||    
T  32391865 catg 32391862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 37897949 - 37897898
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggt 142  Q
    |||||||||||| || ||||||| ||||||||||||||||||||| ||||||    
T  37897949 taagttttgcatatgtggcagttttggcctccaagaccaattttgactcggt 37897898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 2974702 - 2974804
Alignment:
Q  77 acaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    ||||||| | ||| |||||||||||| || ||||||| ||||| ||||  ||||||||| |||||| |||  |||| || || ||||| |||||||||||    
T  2974702 acaaaaccgccccctaagttttgcatctgtggcagttttggcccccaatgccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgccac 2974801  T
Q  177 atg 179  Q
    |||    
T  2974802 atg 2974804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 20512264 - 20512364
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||||| ||| |||||||||||  || || |||| || || ||||||||||||||| |||||| |||  | ||||| || ||||| ||||||||||    
T  20512264 tacaaaactgccccctaagttttgcacctgtggtagttttgacccccaagaccaattttgactcggtctacgctaacatggcaccctaagtgaggtgcca 20512363  T
Q  176 c 176  Q
    |    
T  20512364 c 20512364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 26702519 - 26702603
Alignment:
Q  92 aagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||  ||||| ||   |||| || || ||||| |||||||||||    
T  26702519 aagttttgcatttgtggcagttttggcccccaagaccaattttgattcggtctatcctgacgtggcaccctaagtgaggtgccac 26702603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 26972252 - 26972336
Alignment:
Q  92 aagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||  ||||| ||   |||| || || ||||| |||||||||||    
T  26972252 aagttttgcatttgtggcagttttggcccccaagaccaattttgattcggtctatcctgacgtggcaccctaagtgaggtgccac 26972336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 36798254 - 36798341
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    |||||||||||| || ||||||| ||||| |||||||||| |||| |||||| |||| |||| || ||  |||| ||||||||||||||    
T  36798254 taagttttgcatctgtggcagttttggcccccaagaccaa-tttgactcggtctacactgacgtggcactctaagtgaggtgccacatg 36798341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 3333935 - 3333848
Alignment:
Q  88 ccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    ||||||||||||||| || ||||||| ||||| |||||  |||||||| |||||| |||  |||| || || ||||| ||||||||||    
T  3333935 ccataagttttgcatatgtggcagttttggcccccaaggtcaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcca 3333848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 40276275 - 40276172
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| ||||| |||||||||||| || |||| || || || ||||| | ||||||| | |||| |||  |||| ||||| ||||| ||||||||||    
T  40276275 tacaaaaccgtcccctaagttttgcatatgtggcaattttgacccccaaggctaattttgacccggtctacgctgacgtgacaccctaagtgaggtgcca 40276176  T
Q  176 catg 179  Q
    ||||    
T  40276175 catg 40276172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 40276144 - 40276086
Alignment:
Q  193 aaattggcattggggggctaaaaaagccacagttgcaaaacttagtggacgattgtgta 251  Q
    |||||||| ||||||||| ||||  || ||||||||||||||||| |||||||| ||||    
T  40276144 aaattggccttggggggccaaaactgctacagttgcaaaacttaggggacgattttgta 40276086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 28446071 - 28446168
Alignment:
Q  75 ttacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtg 172  Q
    |||||||||| |||| ||||||||||||||| | ||| | ||||| | ||| ||||||||| |||||| |||  |||| ||||| ||||  |||||||    
T  28446071 ttacaaaactatcccttaagttttgcatttgtgacagctttggcccctaaggccaattttgactcggtatacgctgacctgacaccctacgtgaggtg 28446168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 36798364 - 36798469
Alignment:
Q  193 aaattggcattggggggctaaaaaagccacagttgcaaaacttagtggacgattgtgtagnnnnnnnncttagtgatccaaaatcgcaactttgagaaag 292  Q
    |||||||| ||||||||| ||||  || ||||||||||||||||| || || || || ||        ||||| |  |||||||||||||||||||||||    
T  36798364 aaattggctttggggggccaaaactgctacagttgcaaaacttagggggcggttttgcagttttttttcttaggggaccaaaatcgcaactttgagaaag 36798463  T
Q  293 ttaggg 298  Q
    ||||||    
T  36798464 ttaggg 36798469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 35166378 - 35166466
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    |||||||||||  || ||| ||| |||||| |||   |||||||| |||||| |||  |||||||||| ||||| ||||||||||||||    
T  35166378 taagttttgcacatgtggcggttttggccttcaatgtcaattttgactcggtctacgctgacatgacaccctaagtgaggtgccacatg 35166466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 44617986 - 44617889
Alignment:
Q  75 ttacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtg 172  Q
    ||||||||| | ||| ||||||||||||||| ||||||| ||||| ||||||||||||||| |||||| |||  |||| || || ||||| |||||||    
T  44617986 ttacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaagaccaattttgactcggtctacgctgacgtggcaccctaaatgaggtg 44617889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 37431626 - 37431714
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    ||||||||||||||| ||||||| ||||| ||||| ||||||||| |||||| |||  |||| || || ||||| ||||||||||||||    
T  37431626 taagttttgcatttgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgccacatg 37431714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 5362422 - 5362318
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaaga-ccaattttggctcggtttacattgacatgacatcctaactgaggtgcc 174  Q
    ||||||| |||||| |||||||| ||  || ||||||| |||||||||| | ||||||||| ||| || |||  |||| ||||||||||| |||||||||    
T  5362422 tacaaaattgtcccttaagttttacaactgtggcagttttggcctccaaaagccaattttgactcagtctacgctgacgtgacatcctaagtgaggtgcc 5362323  T
Q  175 acatg 179  Q
    |||||    
T  5362322 acatg 5362318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 27489519 - 27489596
Alignment:
Q  95 ttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtg 172  Q
    |||||||| || ||||||| |||||||||||  |||||||| ||||||||||  |||| || |||||||| |||||||    
T  27489519 ttttgcatctgtggcagttttggcctccaagggcaattttgactcggtttacgctgacgtggcatcctaagtgaggtg 27489596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 14489280 - 14489347
Alignment:
Q  75 ttacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggt 142  Q
    ||||||||| | ||| |||||||||||  || ||||||| || |||||||||||||||||| ||||||    
T  14489280 ttacaaaaccgccccctaagttttgcacctgtggcagttttgacctccaagaccaattttgactcggt 14489347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 34760915 - 34760974
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttg 135  Q
    |||||||| | ||| |||||||||||| || ||||||| ||||| |||||||||||||||    
T  34760915 tacaaaaccgccccctaagttttgcatatgtggcagttttggcccccaagaccaattttg 34760974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 34679180 - 34679265
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    |||||||||||  || ||||||| ||||||||||||| ||||||| | |||| |||  |||| || || ||||| |||||||||||    
T  34679180 taagttttgcacatgtggcagttttggcctccaagacaaattttgacccggtctacgctgacgtggcaccctaagtgaggtgccac 34679265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 4925507 - 4925567
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttgg 136  Q
    |||||||| ||||| |||||||||||| || ||||||| || || | ||||||||||||||    
T  4925507 tacaaaaccgtcccctaagttttgcatatgtggcagttttgacccctaagaccaattttgg 4925567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 5470583 - 5470483
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| |||||||| ||| || ||||||| ||||| ||||| ||||||||| |||||| ||   |||| || || ||||| ||||||||||    
T  5470583 tacaaaaccgccccttaagttttacatctgtggcagttttggcccccaaggccaattttgactcggtctatgctgacgtggcaccctaagtgaggtgcca 5470484  T
Q  176 c 176  Q
    |    
T  5470483 c 5470483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 39918483 - 39918455
Alignment:
Q  270 ccaaaatcgcaactttgagaaagttaggg 298  Q
    |||||||||||||||||||||||||||||    
T  39918483 ccaaaatcgcaactttgagaaagttaggg 39918455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 43028876 - 43028960
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||||||| || ||||||| ||||||| | | ||||||||| |||||| |||  |||| || || ||||| ||||||||||    
T  43028876 taagttttgcatctgtggcagttttggcctctagggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcca 43028960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 15107223 - 15107135
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    ||||||||||||||| ||||||| ||||||||||  ||||||||| |||||| |||| |||  || || ||||| ||||||||||||||    
T  15107223 taagttttgcatttgtggcagttttggcctccaatgccaattttgactcggtctacactgatgtggcaccctaagtgaggtgccacatg 15107135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 28786001 - 28785901
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||||| ||||||||||||||||||  ||||||| || || ||||| | ||||||| |||||| |||  |||| ||||| ||||| ||||||||||    
T  28786001 tacaaaactgccccataagttttgcatttatggcagttttgacccccaaggctaattttgactcggtctacgctgacgtgacaccctaagtgaggtgcca 28785902  T
Q  176 c 176  Q
    |    
T  28785901 c 28785901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 44312989 - 44312886
Alignment:
Q  75 ttacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcc 174  Q
    ||||||||||| | | ||||||||||||||| | ||||| |||| || ||||||||||||| |||||| ||   ||||||| || ||||| |||||||||    
T  44312989 ttacaaaactgcctcctaagttttgcatttgtgacagttttggcttc-aagaccaattttgactcggtctatgctgacatgtcaccctaagtgaggtgcc 44312891  T
Q  175 acatg 179  Q
    |||||    
T  44312890 acatg 44312886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 18186694 - 18186597
Alignment:
Q  79 aaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    ||||| ||||| |||||||||||| || ||||||| ||| | ||||| ||||||||| ||| || ||| ||||| || || ||||| |||||||||||    
T  18186694 aaaaccgtcccttaagttttgcatctgtggcagttttggtccccaaggccaattttgactcagtctacgttgacgtggcaccctaagtgaggtgccac 18186597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 28472469 - 28472558
Alignment:
Q  90 ataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    ||||||||||| | || ||||||| | ||| |||||||||||||||  ||||| ||| ||||| ||||| ||| | ||||||||||||||    
T  28472469 ataagttttgcttatgtggcagttttcgcccccaagaccaattttgattcggtctacgttgacgtgacaccctgaatgaggtgccacatg 28472558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 36903345 - 36903433
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    |||||||| ||| || ||||||| |||||  |||| ||||||||| |||||| |||  ||||||| || ||||| ||||||||||||||    
T  36903345 taagttttccatctgtggcagttttggccctcaaggccaattttgactcggtctacgctgacatggcaccctaagtgaggtgccacatg 36903433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 17876236 - 17876301
Alignment:
Q  75 ttacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcg 140  Q
    ||||||||||| ||| ||| |||||||| || ||| ||| ||||||||||| ||||||||| ||||    
T  17876236 ttacaaaactgccccctaaattttgcatctgtggcggttttggcctccaaggccaattttgactcg 17876301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 41243725 - 41243806
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtg 172  Q
    ||||||||||||||| ||||||| | | | ||||| ||||||||| |||||| ||| ||||| || || ||||| |||||||    
T  41243725 taagttttgcatttgtggcagtttttgtccccaaggccaattttgactcggtctacgttgacgtggcaccctaagtgaggtg 41243806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 18504311 - 18504411
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| |||||||||||| || ||||||| ||||||| ||| ||||||||| ||| || |||  |||| || || ||||| |||||| |||    
T  18504311 tacaaaaccgccccctaagttttgcatatgtggcagttttggcctctaaggccaattttgactcagtctacgctgacgtggcaccctaagtgaggttcca 18504410  T
Q  176 c 176  Q
    |    
T  18504411 c 18504411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 36580521 - 36580425
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtg 172  Q
    |||||||| | ||| ||||||||||||||| ||||||| ||||| ||||   |||||||| |||||| |||  |||| || || ||||| |||||||    
T  36580521 tacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaaagtcaattttgactcggtctacgctgacgtggcaccctaaatgaggtg 36580425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 6036959 - 6036803
Alignment:
Q  25 ttttaggccctaacttttcgaaagttgcgattttttcc--ctaagnnnnnnnttacaaaactgtcccataagttttgcatttgcggcagttctggcctcc 122  Q
    |||||| |||||||||||| ||||||||||||||  ||  |||||        |||||||||||||| |||||||||||| || ||||||| || || ||    
T  6036959 ttttagcccctaacttttctaaagttgcgattttggcctcctaagaagaaaactacaaaactgtcccctaagttttgcatatgtggcagttttgaccccc 6036860  T
Q  123 aagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    ||  ||||||||| || ||||||   |||| ||||| ||||| ||||||||||||||    
T  6036859 aaagccaattttgacttggtttatgctgacgtgacaccctaagtgaggtgccacatg 6036803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 2841054 - 2840990
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcg 140  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||  ||| |||||||||| ||||    
T  2841054 tacaaaacagtcccataagttttgcatttgtggcagttttggcccgcaaaaccaattttgactcg 2840990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 26311635 - 26311550
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    |||||||||||| || ||||||| ||||| |||||  |||||||| |||||| |||  |||| || |||||||| |||||||||||    
T  26311635 taagttttgcatatgtggcagttttggcccccaaggtcaattttgactcggtctacgctgacgtggcatcctaagtgaggtgccac 26311550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 32143325 - 32143401
Alignment:
Q  75 ttacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattga 151  Q
    ||||||||| | ||| |||||||||||  || ||||||| ||||| ||||||||||||||| |||||| ||| ||||    
T  32143325 ttacaaaaccgccccttaagttttgcacctgtggcagttttggcccccaagaccaattttgactcggtctacgttga 32143401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 6036711 - 6036770
Alignment:
Q  75 ttacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaatttt 134  Q
    |||||||||| |||| |||||||||||| || ||||||| ||||| ||||| ||||||||    
T  6036711 ttacaaaactatcccctaagttttgcatatgtggcagttttggcccccaaggccaatttt 6036770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 30349416 - 30349519
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| |||||||||||| || || |||| || || ||||| |||||| || |||||| ||| ||||| || || ||||| ||||||||||    
T  30349416 tacaaaaccgccccttaagttttgcatctgtggtagttttgacccccaaggccaattatgactcggtctacgttgacgtggcaccctaagtgaggtgcca 30349515  T
Q  176 catg 179  Q
    ||||    
T  30349516 catg 30349519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 266358 - 266262
Alignment:
Q  75 ttacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtg 172  Q
    ||||||||| | ||| |||||||||||  || ||||||| ||||| |||| ||||||||||  ||||| |||  |||| ||||||||||| |||||||    
T  266358 ttacaaaaccgccccttaagttttgcacctgtggcagttttggcc-ccaaaaccaattttgattcggtctacgctgacgtgacatcctaagtgaggtg 266262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 14449515 - 14449430
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    ||||||||||||||| ||||||| ||||| ||||| ||||||||| ||||||||||  |||| || || | ||| |||||||||||    
T  14449515 taagttttgcatttgtggcagttttggcccccaaggccaattttgactcggtttacgctgacgtggcaccataagtgaggtgccac 14449430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 1420790 - 1420690
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||||||||||||||||||| ||||||| || || ||||| ||||||||| ||||||  ||  |||| || || ||||| ||||||||||    
T  1420790 tacaaaaccgccccataagttttgcatttgtggcagttatgacccccaaggccaattttgactcggtcaacgctgacgtggcaccctaagtgaggtgcca 1420691  T
Q  176 c 176  Q
    |    
T  1420690 c 1420690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 6637294 - 6637206
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    ||||||||||||||  ||||||| |||||  |||  ||||||||| |||||| |||| ||||||| || ||||| ||||||||||||||    
T  6637294 taagttttgcatttctggcagttttggcccacaatgccaattttgactcggtctacactgacatggcaccctaagtgaggtgccacatg 6637206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 12719676 - 12719588
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    |||||||||||| || ||||||| ||||||||||||||||||||| |||||| |||  |||  || || || || ||||||||||||||    
T  12719676 taagttttgcatctgtggcagttttggcctccaagaccaattttgactcggtctacgctgatgtggcaccccaagtgaggtgccacatg 12719588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 51362607 - 51362702
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggt 171  Q
    |||||||| | ||| |||||||||||| || ||||||| ||||| ||||||||||||||| ||| || |||| |||| || || ||||| ||||||    
T  51362607 tacaaaaccgccccctaagttttgcatatgtggcagttttggcccccaagaccaattttgactcagtctacactgacgtggcaccctaagtgaggt 51362702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 10059943 - 10059846
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgc 173  Q
    |||||||| | ||| |||||||||||| || ||||||| |||||  |||| ||||||||| |||||| ||| ||||| || || ||||| ||||||||    
T  10059943 tacaaaaccgccccctaagttttgcatctgtggcagttttggccctcaaggccaattttgactcggtctacgttgacgtggcaccctaagtgaggtgc 10059846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 21597648 - 21597548
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| ||||| ||| |||||||| || ||||||| ||||| |||| || ||||||| |||||| |||  |||| || || ||||| ||||||||||    
T  21597648 tacaaaaccgtcccctaaattttgcatatgtggcagttttggcccccaaaactaattttgactcggtctacgctgacgtggcaccctaaatgaggtgcca 21597549  T
Q  176 c 176  Q
    |    
T  21597548 c 21597548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 44356645 - 44356585
Alignment:
Q  75 ttacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttg 135  Q
    ||||||||| | ||| |||||||||||| || ||||||| ||||| |||||||||||||||    
T  44356645 ttacaaaaccgccccctaagttttgcatatgtggcagttttggcccccaagaccaattttg 44356585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 2016859 - 2016954
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggt 171  Q
    |||||||||| ||| |||||||||||  || ||||||| ||||| ||||| ||||||||| |||||| |||  |||| || || ||||| ||||||    
T  2016859 tacaaaactgccccctaagttttgcacatgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggt 2016954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 27978758 - 27978825
Alignment:
Q  75 ttacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggt 142  Q
    ||||||||||| |  |||||||||||||||| ||||||| || || ||||| ||||||||| ||||||    
T  27978758 ttacaaaactgccatataagttttgcatttgtggcagttttgacccccaaggccaattttgactcggt 27978825  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 14060949 - 14060883
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggt 142  Q
    |||||||||||||| |||||||| ||| || ||||||| ||||| ||||| | ||||||| ||||||    
T  14060949 tacaaaactgtcccctaagttttacatctgtggcagttttggcccccaaggctaattttgactcggt 14060883  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 6615040 - 6614987
Alignment:
Q  126 accaattttggctcggtttacattgacatgacatcctaactgaggtgccacatg 179  Q
    |||||||||| |||||| |||  |||||||||| ||||| ||||||||||||||    
T  6615040 accaattttgactcggtctacgctgacatgacaccctaagtgaggtgccacatg 6614987  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 43074819 - 43074734
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgccac 176  Q
    |||||||||||| || ||||||| ||||| ||||| ||||||||| ||| || |||  |||| || || ||||| |||||||||||    
T  43074819 taagttttgcatctgtggcagttttggcccccaaggccaattttgactcagtctacgctgacgtggcaccctaagtgaggtgccac 43074734  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 2836967 - 2837067
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| | ||| |||||||||||| || |  |||| ||||| ||||| ||||||||| ||| || |||| |||| || || ||||| ||||||||||    
T  2836967 tacaaaaccgccccctaagttttgcatgtgtgagagttttggcccccaaggccaattttgactcagtctacactgacgtggcaccctaagtgaggtgcca 2837066  T
Q  176 c 176  Q
    |    
T  2837067 c 2837067  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 19909222 - 19909194
Alignment:
Q  270 ccaaaatcgcaactttgagaaagttaggg 298  Q
    |||||||||||||||||||||||||||||    
T  19909222 ccaaaatcgcaactttgagaaagttaggg 19909194  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 299
Target Start/End: Complemental strand, 21957587 - 21957559
Alignment:
Q  271 caaaatcgcaactttgagaaagttaggga 299  Q
    |||||||||||||||||||||||||||||    
T  21957587 caaaatcgcaactttgagaaagttaggga 21957559  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 23759820 - 23759756
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcg 140  Q
    |||||||| ||||| ||||||||| || || | ||||| ||||||||||| ||||||||| ||||    
T  23759820 tacaaaaccgtcccctaagttttgtatctgtgacagttttggcctccaaggccaattttgactcg 23759756  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 298
Target Start/End: Original strand, 44356662 - 44356690
Alignment:
Q  270 ccaaaatcgcaactttgagaaagttaggg 298  Q
    |||||||||||||||||||||||||||||    
T  44356662 ccaaaatcgcaactttgagaaagttaggg 44356690  T

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Target: scaffold0328 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 9479 - 9579
Alignment:
Q  76 tacaaaactgtcccataagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtgcca 175  Q
    |||||||| ||||| |||||||||||| || ||||||| | ||| ||||| ||||||||| |||||| ||   |||| ||||||| ||| ||||||||||    
T  9479 tacaaaaccgtcccctaagttttgcatatgtggcagttttagcccccaaggccaattttgactcggtctaggctgacgtgacatcttaaatgaggtgcca 9578  T
Q  176 c 176  Q
    |    
T  9579 c 9579  T

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Target: scaffold0248 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 486 - 567
Alignment:
Q  91 taagttttgcatttgcggcagttctggcctccaagaccaattttggctcggtttacattgacatgacatcctaactgaggtg 172  Q
    |||||||| ||| || ||||||| ||||| ||||||||||||||| |||||| || | |||| || || ||||| |||||||    
T  486 taagttttacatatgtggcagttttggcccccaagaccaattttgactcggtctatactgacgtggcaccctaaatgaggtg 567  T

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Target: scaffold0809 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 3023 - 3051
Alignment:
Q  271 caaaatcgcaactttgagaaagttaggga 299  Q
    |||||||||||||||||||||||||||||    
T  3023 caaaatcgcaactttgagaaagttaggga 3051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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