View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8060_high_6 (Length: 304)
Name: NF8060_high_6
Description: NF8060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8060_high_6 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 41288350 - 41288645
Alignment:
| Q |
17 |
agctattgagtaaaataatgaggagaatttcttcaaaaaggtgaaatagtgagaagaatggta-----taatagt--tcagttgaggagaattgtgtaag |
109 |
Q |
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| T |
41288350 |
agctattgagtaaaataatgaggagaatttcgtcaaaaaggtgaaatagtgagaagaatggtcattactaattgtgttcagttgaggagaattgtgtaag |
41288449 |
T |
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| Q |
110 |
gg------atgttataaattgataattgcaaatgtttattaagtcaaagatcaaatcgaaagtcaaagatcaattagatttagtgttcttgttacattac |
203 |
Q |
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| T |
41288450 |
ggtttagaatgttataaattgataattgcaaatgtttattaagtcaaagatcaaatcgaaagtcaaagatcaattagatttagtgttctt-----attac |
41288544 |
T |
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| Q |
204 |
attgaagagaaaggaaaagatagaagaagattaagctctaggactaaatcattactatagagtacctaagaaagaaaggagagactttcatcatttttct |
303 |
Q |
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| T |
41288545 |
attgaagagaaaggaaaagatagaagaagattaagctctaggactaaatcattactatagagtacttaagaaagaaaggagagactttcatcatttttct |
41288644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 29276028 - 29275981
Alignment:
| Q |
112 |
atgttataaattgataattgcaaatgtttattaagtcaaagatcaaat |
159 |
Q |
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| T |
29276028 |
atgttacaaattgataatcgcaaatgtttattaaatcaaaggtcaaat |
29275981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 29346834 - 29346876
Alignment:
| Q |
262 |
agagtacctaagaaagaaaggagagactttcatcatttttctt |
304 |
Q |
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| T |
29346834 |
agagtaccaaagggagaaaggagagactttcatcatttttctt |
29346876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 23406679 - 23406637
Alignment:
| Q |
262 |
agagtacctaagaaagaaaggagagactttcatcatttttctt |
304 |
Q |
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| T |
23406679 |
agagtaccaaagagagagaggagagactttcatcatttttctt |
23406637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 36316002 - 36316094
Alignment:
| Q |
217 |
gaaaagatagaagaagattaagctctaggactaaatcattactata-----gagtacctaagaaagaaaggagagactttcatcatttttctt |
304 |
Q |
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| T |
36316002 |
gaaaacatagaagaagattaagtcctaagactaaatcattactctactagagagtatcaaagggagagaggagagattttcatcatttttctt |
36316094 |
T |
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