View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8060_low_1 (Length: 461)
Name: NF8060_low_1
Description: NF8060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8060_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Original strand, 15024262 - 15024696
Alignment:
| Q |
11 |
ttattctttaaatgtttgaaaattgttatcttaaaaggaagttaaacacatcgatctattagcttgttagtctaattaaaaaatcatcaaattagttatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |
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| T |
15024262 |
ttattctttaaatgtttgaaaattgttatcttaaaaggaagttaaacacatcgatctattagcttgttagtctaattaaaaatttatcaaattagtaatt |
15024361 |
T |
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| Q |
111 |
taactatgttcttattaaaattttaaacagactaatatgtaatatcaaacttttaaattttcaaactaacac--aaaataaatctatgacaagctttttt |
208 |
Q |
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| T |
15024362 |
taactatgttcttattagaattttaaacagactaatatgtaatatcaaacttttaaattttcaaactcacacaaaaaataaatctatgacaagttttttt |
15024461 |
T |
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| Q |
209 |
acaaaatatcgtccaactttaggccttcannnnnnnnnccattgtttaaatttaggtcttgcaaagcttaccttgacacaatctatgctcaccattattt |
308 |
Q |
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| T |
15024462 |
acaaaatatcgtccaactttaggccttca-ttttttttccattgtttaaatttaggtcttgcaaagcttaccttgacgcaatctatgctcaccattattt |
15024560 |
T |
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| Q |
309 |
agagcacttgtgatcaaaatcttattatatatcaaaacatttaaacgatagagagtaaattatatttatttttcatatttttgttactcctatcattaaa |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15024561 |
agagcacttgtgatcaaaatcttattatatatcaaaacatttaaacgatagagagtaaattatatttatttttcatatttttgttactcttatcattaaa |
15024660 |
T |
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| Q |
409 |
accttggtttgtctatcctatgcactagattaagac |
444 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
15024661 |
accttggtttgtctatcctatgcactagattaagac |
15024696 |
T |
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