View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8060_low_2 (Length: 410)

Name: NF8060_low_2
Description: NF8060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8060_low_2
NF8060_low_2
[»] chr1 (11 HSPs)
chr1 (19-394)||(35254111-35254486)
chr1 (45-262)||(8640512-8640729)
chr1 (78-250)||(35203484-35203656)
chr1 (19-275)||(35193074-35193330)
chr1 (92-249)||(35249880-35250037)
chr1 (19-250)||(35294831-35295062)
chr1 (91-261)||(35477227-35477397)
chr1 (107-179)||(45534691-45534763)
chr1 (110-245)||(35265638-35265773)
chr1 (97-165)||(35223065-35223133)
chr1 (19-51)||(35273085-35273117)
[»] chr3 (1 HSPs)
chr3 (26-168)||(898564-898706)
[»] chr2 (2 HSPs)
chr2 (186-245)||(33135429-33135488)
chr2 (19-73)||(18558273-18558327)


Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 35254111 - 35254486
Alignment:
Q  19 atcagatagagcgagatagagatcctttttggtggaagcattggcaagggaaggaaattgggagatgacagtgtcgatgaattgggaatcggaagggaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35254111 atcagatagagcgagatagagatcctttttggtggaagcattggcaagggaaggaaattgggagatgacagtgtcgatgaattgggaatcggaagggaga 35254210  T
Q  119 aattgattccatacttcgtcggaattggcggcagaacggaaagttttggagacgagagagagcctgacggcgtcaaaaggagtggtacgagagagtatcg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35254211 aattgattccatacttcgtcggaattggcggcagaacggaaagttttggagacgagagagagcctgacggcgtcaaaaggagtggtacgagagagtatcg 35254310  T
Q  219 cggcaacacattcttccggcaattcctcaaacgccgccattcttttgattttatttttcagtgaagaagaagaagaatacggcttgaaattgttccagtg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35254311 cggcaacacattcttccggcaattcctcaaacgccgccattcttttgattttatttttcagtgaagaagaagaagaatacggcttgaaattgttccagtg 35254410  T
Q  319 ggtttatagtttatgcggcaagattacatattcgcgtgaattcaacgaagccgtgtaaaaattcacatgttgtgtg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35254411 ggtttatagtttatgcggcaagattacatattcgcgtgaattcaacgaagccgtgtaaaaattcacatgttgtgtg 35254486  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 262
Target Start/End: Original strand, 8640512 - 8640729
Alignment:
Q  45 ttttggtggaagcattggcaagggaaggaaattgggagatgacagtgtcgatgaattgggaatcggaagggagaaattgattccatacttcgtcggaatt 144  Q
    ||||||||| ||| ||||||||||||||||| || ||||||| |  | | |||| | ||| ||| ||| |||||||  ||| ||| | ||| ||||| |     
T  8640512 ttttggtgggagcgttggcaagggaaggaaactgtgagatgatatcggctatgagtaggggatcagaacggagaaaacgatcccagatttcatcggagtc 8640611  T
Q  145 ggcggcagaacggaaagttttggagacgagagagagcctgacggcgtcaaaaggagtggtacgagagagtatcgcggcaacacattcttccggcaattcc 244  Q
    |||||||||||||||||| |||||||| |||||||||||| || |||||| |||||| |||||| ||||||  |||||||  ||| |||||| ||||||     
T  8640612 ggcggcagaacggaaagtcttggagacaagagagagcctgccgacgtcaacaggagtcgtacgacagagtacggcggcaatgcatccttccgccaattct 8640711  T
Q  245 tcaaacgccgccattctt 262  Q
    ||||| ||  ||||||||    
T  8640712 tcaaaggctcccattctt 8640729  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 35203484 - 35203656
Alignment:
Q  78 gggagatgacagtgtcgatgaattgggaatcggaagggagaaattgattccatacttcgtcggaattggcggcagaacggaaagttttggagacgagaga 177  Q
    ||||||||| || ||||||||| || |||||||||||||||||||||||||| ||  ||||||||| |||||||||| | |  || ||||| || |  ||    
T  35203484 gggagatgatagagtcgatgaaatgagaatcggaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaattgtcttggaaacaacgga 35203583  T
Q  178 gagcctgacggcgtcaaaaggagtggtacgagagagtatcgcggcaacacattcttccggcaattcctcaaac 250  Q
    ||| ||| ||||||||   ||||| || |||||||| || |||| ||  ||| ||||||||||||||||||||    
T  35203584 gagtctgccggcgtcagccggagttgtgcgagagagaatggcggaaatgcatccttccggcaattcctcaaac 35203656  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 35193074 - 35193330
Alignment:
Q  19 atcagatagagcgagatagagatcctttttgg-tggaagcattggcaagggaaggaaattgggagatgacagtgtcgatgaattgggaatcggaagggag 117  Q
    |||||| ||||||||||| ||| | ||||||| ||| | |||| |||||||| ||| | || ||||||| || ||||||||| || ||||||||||||||    
T  35193074 atcagagagagcgagatacagagcttttttggatggta-cattagcaagggatggagagtgtgagatgatagagtcgatgaaatgagaatcggaagggag 35193172  T
Q  118 aaattgattccatacttcgtcggaattggcggcagaacggaaagttttggagacgagagagagcctgacggcgtcaaaaggagtggtacgagagagtatc 217  Q
    |||||||||||| ||  |||| |||| ||| |||||  ||||||| ||||| || |  ||||| ||| |||| |||   ||||| || ||||||| |||     
T  35193173 aaattgattccagacggcgtcagaatcggctgcagataggaaagtcttggaaacaacggagagtctgccggcatcagccggagttgtgcgagagattatg 35193272  T
Q  218 gcggcaacacattcttccggcaattcctcaaacgccgccattcttttgattttatttt 275  Q
    |||| ||  ||| ||||||  |||||||||||| | | |||||||||| |||| ||||    
T  35193273 gcggaaatgcatccttccgataattcctcaaactctgtcattcttttgcttttttttt 35193330  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 35249880 - 35250037
Alignment:
Q  92 tcgatgaattgggaatcggaagggagaaattgattccatacttcgtcggaattggcggcagaacggaaagttttggagacgagagagagcctgacggcgt 191  Q
    |||||||| | || || |||||||| ||| || ||||| ||  |||||||||  |||||||||||||  || || || ||||| ||||| ||||||||||    
T  35249880 tcgatgaaatcgggataggaagggataaagtggttccagacggcgtcggaatcagcggcagaacggagtgtcttagaaacgagggagagtctgacggcgt 35249979  T
Q  192 caaaaggagtggtacgagagagtatcgcggcaacacattcttccggcaattcctcaaa 249  Q
    |||  ||||| || ||||||||||| |||||||  || |||||||||||||| |||||    
T  35249980 caacgggagtcgttcgagagagtatggcggcaatgcactcttccggcaattcatcaaa 35250037  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 35295062 - 35294831
Alignment:
Q  19 atcagatagagcgagatagagatcctttttggtggaagcattggcaagggaaggaaattgggagatgacagtgtcgatgaattgggaatcggaagggaga 118  Q
    ||||||||| |||||||| |||||||||||||| | | | ||| ||||||||||| ||||  |||| | || ||| |||||  | ||||  | ||| |||    
T  35295062 atcagatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgtaagattatagagtcaatgaaaggagaatgaggaggtaga 35294963  T
Q  119 aattgattccatacttcgtcggaattggcggcagaacggaaagttttggagacgagagagagcctgacggcgtcaaaaggagtggtacgagagagtatcg 218  Q
    ||  ||| ||| || |||||||| ||||| |||||| ||||||||||||| ||||| |||||  |  |||||||||  ||||| |||||||| ||||| |    
T  35294962 aagcgatcccagacatcgtcggagttggcagcagaatggaaagttttggaaacgagggagagttttccggcgtcaacgggagttgtacgagacagtatgg 35294863  T
Q  219 cggcaacacattcttccggcaattcctcaaac 250  Q
     |||||  ||  |||| | |||||||||||||    
T  35294862 tggcaatgcacccttctgccaattcctcaaac 35294831  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 261
Target Start/End: Original strand, 35477227 - 35477397
Alignment:
Q  91 gtcgatgaattgggaatcggaagggagaaattgattccatacttcgtcggaattggcggcagaacggaaagttttggagacgagagagagcctgacggcg 190  Q
    ||||||||||||||||||  || ||||||| |||||||||||  |||| ||||  |||||| ||||||| || ||||| ||||  ||||  ||| |||||    
T  35477227 gtcgatgaattgggaatcataacggagaaagtgattccatacggcgtccgaatcagcggcacaacggaatgtcttggaaacgacggagaatctgccggcg 35477326  T
Q  191 tcaaaaggagtggtacgagagagtatcgcggcaacacattcttccggcaattcctcaaacgccgccattct 261  Q
    |||   |||||||||| ||| ||||| |||||||  ||  ||||||| ||||| ||||||||  |||||||    
T  35477327 tcagctggagtggtacaagatagtatggcggcaatgcacccttccggtaattcttcaaacgctaccattct 35477397  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 45534691 - 45534763
Alignment:
Q  107 tcggaagggagaaattgattccatacttcgtcggaattggcggcagaacggaaagttttggagacgagagaga 179  Q
    |||||||||||||| |||||||| ||  |||||||| ||||||||||| ||||||| ||||| |||| |||||    
T  45534691 tcggaagggagaaaatgattccagacggcgtcggaactggcggcagaatggaaagtcttggacacgacagaga 45534763  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 245
Target Start/End: Original strand, 35265638 - 35265773
Alignment:
Q  110 gaagggagaaattgattccatacttcgtcggaattggcggcagaacggaaagttttggagacgagagagagcctgacggcgtcaaaaggagtggtacgag 209  Q
    ||||| |||||||||||||| ||  ||||||||| || ||| || |||||||| || || ||||  ||||| ||| |||||||||  ||||| |||||||    
T  35265638 gaaggtagaaattgattccagacagcgtcggaatcggaggctgatcggaaagtctttgaaacgacggagagtctgccggcgtcaactggagttgtacgag 35265737  T
Q  210 agagtatcgcggcaacacattcttccggcaattcct 245  Q
    ||| ||| | |||||  ||  |||||||||| ||||    
T  35265738 agactatggtggcaatgcaaccttccggcaaatcct 35265773  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 35223065 - 35223133
Alignment:
Q  97 gaattgggaatcggaagggagaaattgattccatacttcgtcggaattggcggcagaacggaaagtttt 165  Q
    ||||||||  |||||| ||||||| |||||||| ||  |||| |||| |||||| ||||||||||||||    
T  35223065 gaattgggggtcggaacggagaaaatgattccaaacggcgtcagaatcggcggcggaacggaaagtttt 35223133  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 35273085 - 35273117
Alignment:
Q  19 atcagatagagcgagatagagatcctttttggt 51  Q
    |||||||||||| ||||||||||||||||||||    
T  35273085 atcagatagagcaagatagagatcctttttggt 35273117  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 898706 - 898564
Alignment:
Q  26 agagcgagatagagatcctttttggtggaagcattggcaagggaaggaaattgggagatgacagtgtcgatgaattgggaatcggaagggagaaattgat 125  Q
    ||||||||||||||  |||||||||||| ||| ||||||||||||||| | || ||||||| || ||  ||||   |||||||  |||||||||| || |    
T  898706 agagcgagatagagggcctttttggtgggagcgttggcaagggaaggagaatgtgagatgatagagttaatgagacgggaatccaaagggagaaagtggt 898607  T
Q  126 tccatacttcgtcggaattggcggcagaacggaaagttttgga 168  Q
    |||| ||  |||||||||  |||||| || ||||||| |||||    
T  898606 tccaaacagcgtcggaatcagcggcataaaggaaagtcttgga 898564  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 33135488 - 33135429
Alignment:
Q  186 cggcgtcaaaaggagtggtacgagagagtatcgcggcaacacattcttccggcaattcct 245  Q
    |||||||||  ||||| ||| |||||||||||||||||| |||| |||||||||| ||||    
T  33135488 cggcgtcaaccggagttgtatgagagagtatcgcggcaatacatccttccggcaagtcct 33135429  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 18558327 - 18558273
Alignment:
Q  19 atcagatagagcgagatagagatcctttttggtggaagcattggcaagggaagga 73  Q
    ||||||||| |||||||||||| |||||||||| | ||| ||||||| |||||||    
T  18558327 atcagatagggcgagatagagagcctttttggttggagcgttggcaatggaagga 18558273  T

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