View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8060_low_3 (Length: 394)
Name: NF8060_low_3
Description: NF8060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8060_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 43064025 - 43064400
Alignment:
| Q |
1 |
agattaactaaccgttacaagaagagatttgggccaaatatgagtattgtgcaagggttgttataagaaaataacatgatgattgatctttaagcaccaa |
100 |
Q |
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| T |
43064025 |
agattaactaaccgttacaagaagagatttggaccaaatatgagtattgtgcaagggttgttataagaaaataacatgaccattgatcgttaggcaccaa |
43064124 |
T |
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| Q |
101 |
gtggtgcatgaggttgctctcatgcacccaccaaattaactacaatcaactgctgttcggcatttttgagatcggttgtgacactctttaaattggttca |
200 |
Q |
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| T |
43064125 |
gtggtgcatgaggttgctctcatgcacccacca----aactacaattaactgttgttcagcatttttgagatcggttgcgacactctttaaattggttca |
43064220 |
T |
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| Q |
201 |
cccgatttaaaaagtgcatcaaaccgtagttaactaactttcaacttttcttgggta-ctacagaacaattgtagaataatataattgcctccattgaca |
299 |
Q |
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| T |
43064221 |
tccgatttaaaaagtgcatcaaacggtagttaattaactttcaactttttttgggtacctacagaacaattgtaaaataatataattgcctccattgaca |
43064320 |
T |
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| Q |
300 |
aacttccaatggcatatagttcaagctgcaagtacataactaacatcacattcgataaaaataattttataaatggtaac |
379 |
Q |
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| T |
43064321 |
aacttccaatggcataaagttcaagctgcaagtacataactaacatcacattcgataaaaataattttataaatggtaac |
43064400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 308
Target Start/End: Complemental strand, 43182083 - 43181916
Alignment:
| Q |
142 |
acaatcaactgctgttcggcatttttgagatcggttgtgacactctttaaattggttcacccgatttaaaaagtgcatcaaaccgtagttaactaacttt |
241 |
Q |
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| T |
43182083 |
acaattaactaccgttcgacatttttgagattggttgaaacattttttaaatcggttcatccgattttaaaagtgtgtcgaacggtagttaactaccgtt |
43181984 |
T |
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| Q |
242 |
caacttttcttgggt-actacagaacaattgtagaataatataattgcctccattgacaaacttccaa |
308 |
Q |
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| T |
43181983 |
taatttttcttgggtgcctaaagtgcagttgtcaaataacataatttcctccattgaataacttccaa |
43181916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 379
Target Start/End: Original strand, 23912569 - 23912659
Alignment:
| Q |
289 |
ctccattgacaaacttccaatggcatatagttcaagctgcaagtacataactaacatcacattcgataaaaataattttataaatggtaac |
379 |
Q |
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| T |
23912569 |
ctccatcgacgaacttccaacgccataaagttcaagtcgcaggtacataactaacatcacattcgataaagataatttattaaatggtaac |
23912659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 23912449 - 23912491
Alignment:
| Q |
61 |
ttataagaaaataacatgatgattgatctttaagcaccaagtg |
103 |
Q |
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| T |
23912449 |
ttataagaaaataacatgattattgctctttaggcaccaagtg |
23912491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 31455350 - 31455402
Alignment:
| Q |
164 |
ttttgagatcggttgtgacactctttaaattggttcacccgatttaaaaagtg |
216 |
Q |
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| T |
31455350 |
ttttgagatcgattgagacaatttttaaatcggttcacccgatttaaaaagtg |
31455402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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