View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8060_low_5 (Length: 374)
Name: NF8060_low_5
Description: NF8060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8060_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 40 - 361
Target Start/End: Complemental strand, 36232848 - 36232529
Alignment:
| Q |
40 |
tcaaaagggaagaatgttaggtccttcaggaacgttaaatacaactactccttgtgctgcatgtaagcttttgagacgaaggtgtgcccaagaatgccct |
139 |
Q |
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| T |
36232848 |
tcaaaagggaagaatgttaggtccttcaggaacactaaatacaactactccttgtgctgcatgcaagcttttgagacgaaggtgtgcccaagaatgccct |
36232749 |
T |
|
| Q |
140 |
ttttctccatatttctctcctcatgagcctcagaagtttgcttctgttcacaaagtctttggtgccagcaacgtctcaaagttactattggtatatacac |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
36232748 |
ttttctccatatttctctcctcatgagcctcagaagtttgcttctgtccacaaagtctttggtgctagcaacgtctcaaagttgctattggtatatacac |
36232649 |
T |
|
| Q |
240 |
atataaaaccttagttcattattacaaatatttcactatttgttaactgatttagctgttgattttattttaagtcgatcgatatacattagcataagtg |
339 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36232648 |
atataaaaccttagttcattattacaaatatttca--atttgttaactgatttagctgttgattttatttcaagtcgatcgatatacattagcataagtg |
36232551 |
T |
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| Q |
340 |
gtttgatgagttttacaaattg |
361 |
Q |
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|||||||||||||||||||||| |
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| T |
36232550 |
gtttgatgagttttacaaattg |
36232529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 31869448 - 31869306
Alignment:
| Q |
89 |
ccttgtgctgcatgtaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttctctcctcatgagcctcagaagtttgcttctgttc |
188 |
Q |
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| T |
31869448 |
ccttgtgctgcatgtaagctattgagaagaagatgtgctgaggaatgccctttctctccttatttttcaccacatgagcctcaaaaatttgcagctgttc |
31869349 |
T |
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| Q |
189 |
acaaagtctttggtgccagcaacgtctcaaagttactattggt |
231 |
Q |
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| T |
31869348 |
ataaagtctttggtgctagcaatgtctctaaattgctattggt |
31869306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 43201032 - 43200866
Alignment:
| Q |
53 |
atgttaggtccttcaggaacgttaaatacaactactccttgtgctgcatgtaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatt |
152 |
Q |
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||||||||||| ||||||| ||||||| | || |||||||| ||||||||||| || ||| |||| ||||| ||||| || || |||||||| |||| |
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| T |
43201032 |
atgttaggtccaccaggaaccctaaatactataaccccttgtgcagcatgtaagctattaagaagaagatgtgctcaagagtgtcccttttctccctatt |
43200933 |
T |
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| Q |
153 |
tctctcctcatgagcctcagaagtttgcttctgttcacaaagtctttggtgccagcaacgtctcaaa |
219 |
Q |
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| T |
43200932 |
tctctcctcatgaaccccaaaagtttgcttctgttcacaaagtttttggtgccagcaacgtctcaaa |
43200866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 32513234 - 32513116
Alignment:
| Q |
92 |
tgtgctgcatgtaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttctctcctcatgagcctcagaagtttgcttctgttcaca |
191 |
Q |
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||||||||||| || ||| | ||| |||| ||||| ||||| || | ||| |||| || ||| || || |||||||||| || |||||| |||||||| |
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| T |
32513234 |
tgtgctgcatgcaaacttctcagaagaagatgtgctcaagattgtctctttgctccttacttccctgctgatgagcctcacaaatttgctaatgttcaca |
32513135 |
T |
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| Q |
192 |
aagtctttggtgccagcaa |
210 |
Q |
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||||||||||||| ||||| |
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| T |
32513134 |
aagtctttggtgctagcaa |
32513116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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