View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8061_high_1 (Length: 1190)
Name: NF8061_high_1
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_1 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 1033; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 1033; E-Value: 0
Query Start/End: Original strand, 8 - 1190
Target Start/End: Complemental strand, 6185959 - 6184781
Alignment:
| Q |
8 |
ggagtagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagca |
107 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185959 |
ggagcagccgagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagca |
6185860 |
T |
|
| Q |
108 |
ttattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185859 |
ttattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagat |
6185760 |
T |
|
| Q |
208 |
ggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185759 |
ggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgcc |
6185660 |
T |
|
| Q |
308 |
ggtgtgaatgtcaaaatgatcacaggtattgctaaaatatctcatttatcagtaacttaatctttcgatcgatattgactacaaaatcctctatttatac |
407 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||| |||||| || |||| || || |||||| ||||||||||| |
|
|
| T |
6185659 |
ggtgtgaatgtcaaaatgattacaggtattactataatatctcatttatgagtaacttgatcttt-ga---atatcgaatataaaatcgtctatttatac |
6185564 |
T |
|
| Q |
408 |
atacgagtctatacgaaaatgatggcaaactttatttctgattataataggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattctt |
507 |
Q |
| |
|
|||| |||||| | |||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6185563 |
atacaagtctacatgaaaatgatgccgaactttatctctgattataataggtgacaatgttttcactgcgaaagctatagcatttgaatgtggaattctt |
6185464 |
T |
|
| Q |
508 |
caacctaatcaggacacagatgaaacggtggttgaaggcgaacagtttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtga |
607 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185463 |
caacctaatcaggacatagatgaaacggtggttgaaggcgaacaatttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtga |
6185364 |
T |
|
| Q |
608 |
tggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcacc |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185363 |
tggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcacc |
6185264 |
T |
|
| Q |
708 |
ggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatattagatgacaattttgca |
807 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185263 |
ggcattgaaagaagccgatatcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcagatattgttatattagatgacaattttgca |
6185164 |
T |
|
| Q |
808 |
tctatagtaacagttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcacttgttatca |
907 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6185163 |
tctatcgtaacagtgttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcccttgttatca |
6185064 |
T |
|
| Q |
908 |
atttcgtagccgcggtttcagccggcgaagtaccattaacagcagttcaattattatgggtgaatttaattatggatacattaggtgctttggctcttgc |
1007 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6185063 |
atttcgttgcggcggtttcagccggtgaagtaccattaacagcagttcaattattatgggtgaatttgattatggatacattaggtgctttggctcttgc |
6184964 |
T |
|
| Q |
1008 |
aactgaaaaacctactaaggaattaatggatgaaaaaccagttggtagaacaaagcctcttattactaacattatgtggaggaatcttgtgtcacaagct |
1107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6184963 |
aactgaaaaacctactaaggaattaatggatgaaaaaccagttggtagaacaaagcctcttattactaacattatgtggaggaatcttgtgtcacaagct |
6184864 |
T |
|
| Q |
1108 |
ttgtaccaaatagtaattttgttaactcttcaattcaaaggtgaggatatttttggtgtgacatcaaaggtaaatgacacatt |
1190 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6184863 |
ttgtaccaaataataattttgttaactcttcaattcaaaggtgaggatatttttggtgtgacatcaaaggtaaatgacacatt |
6184781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 456 - 1190
Target Start/End: Complemental strand, 4236391 - 4235657
Alignment:
| Q |
456 |
aggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattcttcaacctaatcaggacacagatgaaacggtggttgaaggcgaacagttt |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |
|
|
| T |
4236391 |
aggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattcttcaacctaatcaggacacggatgaaacagtggttgaaggcgaacaattt |
4236292 |
T |
|
| Q |
556 |
cgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctccatttgacaaacttctaatggttcaatgcttaa |
655 |
Q |
| |
|
|| ||||| || ||||||||||| || | || ||||| ||||| | ||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
4236291 |
cgtaacttcacacacgaagagaggttggcgaaagttgagaaaatctctgtgatggcaagatcttctccatttgataaacttctaatggtacaatgcttaa |
4236192 |
T |
|
| Q |
656 |
aacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtac |
755 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
4236191 |
aacaaaaaggtcatgtagttgctgtaaccggagacggaacaaacgatgcaccagcattgaaagaagctgatattggactttcaatgggaattcaaggtac |
4236092 |
T |
|
| Q |
756 |
agaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttttaaactggggaagatgtgtttacaacaacatt |
855 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
4236091 |
tgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctattgtaacagttataaattggggaagatgtgtttacaacaacatt |
4235992 |
T |
|
| Q |
856 |
caaaaattcattcaatttcaactaacagtgaatgtggcagcacttgttatcaatttcgtagccgcggtttcagccggcgaagtaccattaacagcagttc |
955 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || || ||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
4235991 |
caaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagttc |
4235892 |
T |
|
| Q |
956 |
aattattatgggtgaatttaattatggatacattaggtgctttggctcttgcaactgaaaaacctactaaggaattaatggatgaaaaaccagttggtag |
1055 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || |||| |||||||| |
|
|
| T |
4235891 |
aattattatgggtgaatttgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaaggatttaatggataaagaacctgttggtag |
4235792 |
T |
|
| Q |
1056 |
aacaaagcctcttattactaacattatgtggaggaatcttgtgtcacaagctttgtaccaaatagtaattttgttaactcttcaattcaaaggtgaggat |
1155 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| | |
|
|
| T |
4235791 |
aacaaagcctcttataactaacattatgtggaggaatcttttgtcacaagctttgtaccaaatagtaattttattaactcttcagtttaaaggtgagagt |
4235692 |
T |
|
| Q |
1156 |
atttttggtgtgacatcaaaggtaaatgacacatt |
1190 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| |
|
|
| T |
4235691 |
atttttggtgtgacttcgaaggtaaatgacacatt |
4235657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 4236866 - 4236517
Alignment:
| Q |
8 |
ggagtagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagca |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||| | ||| ||||||||||||| | |
|
|
| T |
4236866 |
ggagcagcagagatggtactaagaatgtgttcaaaataccatgatggttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagga |
4236767 |
T |
|
| Q |
108 |
ttattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagat |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||| |||| | | ||||||||| | | |||||| |
|
|
| T |
4236766 |
ttattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagat |
4236667 |
T |
|
| Q |
208 |
ggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgct |
307 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
4236666 |
ggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacgacagtggaagcttgccaacatgct |
4236567 |
T |
|
| Q |
308 |
ggtgtgaatgtcaaaatgatcacaggtattgctaaaatatctcatttatc |
357 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
4236566 |
ggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttatc |
4236517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 939 - 1190
Target Start/End: Original strand, 30441398 - 30441650
Alignment:
| Q |
939 |
accattaacagcagttcaattattatgggtgaatttaattatggatacattaggtgctttggctcttgcaactgaaaaacctactaaggaattaatggat |
1038 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30441398 |
accattaatatcagttcaattattatgggtgaatttgattatggatacattagatgctttggctcttgcaactgaaaaacctactaaggaactaatggat |
30441497 |
T |
|
| Q |
1039 |
gaaaaacca-gttggtagaacaaagcctcttattactaacattatgtggaggaatcttgtgtcacaagctttgtaccaaatagtaattttgttaactctt |
1137 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| | ||||| || |||||||||| |||||||||| ||||| |||||| ||||||||| ||| || |
|
|
| T |
30441498 |
aaaaaaaattgttggtagaataaagcctcttattacaagcattacgtagaggaatcttatgtcacaagccttgtatcaaatatcaattttgttgactttt |
30441597 |
T |
|
| Q |
1138 |
caattcaaaggtgaggatatttttggtgtgacatcaaaggtaaatgacacatt |
1190 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
30441598 |
caattcaaaggtgacaataattttggtgtgacattaaaggtaaatgacacatt |
30441650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 8e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 691 - 910
Target Start/End: Complemental strand, 19593039 - 19592829
Alignment:
| Q |
691 |
ggaacaaacgatgcaccggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatat |
790 |
Q |
| |
|
|||| ||| |||||| | ||| |||||||||| |||| | ||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
19593039 |
ggaagaaatgatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatat |
19592940 |
T |
|
| Q |
791 |
tagatgacaattttgcatctatagtaacagttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgt |
890 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19592939 |
tagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt---------agtgaatgt |
19592849 |
T |
|
| Q |
891 |
ggcagcacttgttatcaatt |
910 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
19592848 |
ggcagcacttgttatcaatt |
19592829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 607 - 1035
Target Start/End: Complemental strand, 38357184 - 38356756
Alignment:
| Q |
607 |
atggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcac |
706 |
Q |
| |
|
|||||||||||||| || | ||||||||| | ||||| |||||||||| | | ||||||||||||||||| || ||||| || || ||||||||||||| |
|
|
| T |
38357184 |
atggcaagatcatcccctatggacaaacttttgatggtgcaatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcac |
38357085 |
T |
|
| Q |
707 |
cggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatattagatgacaattttgc |
806 |
Q |
| |
|
| || || |||||||| ||||| || ||||| |||||||| ||||| || ||||| || ||||| ||||| ||||| || || ||||| ||||| || |
|
|
| T |
38357084 |
ctgccttaaaagaagctgatataggactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatatcgtcatcttagacgacaacttcaa |
38356985 |
T |
|
| Q |
807 |
atctatagtaacagttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcacttgttatc |
906 |
Q |
| |
|
||| | | ||| ||||||| |||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||| || |
|
|
| T |
38356984 |
ttctgttgcaactgttttaaggtggggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgata |
38356885 |
T |
|
| Q |
907 |
aatttcgtagccgcggtttcagccggcgaagtaccattaacagcagttcaattattatgggtgaatttaattatggatacattaggtgctttggctcttg |
1006 |
Q |
| |
|
|| || | || || ||||| | || || || || |||||| |||||||| | | ||||||||| | |||||||||||| ||||||||||||| || | |
|
|
| T |
38356884 |
aactttattgcagcagtttcttctggtgatgttcccttaacaacagttcaacttctttgggtgaatctcattatggatacactaggtgctttggcactag |
38356785 |
T |
|
| Q |
1007 |
caactgaaaaacctactaaggaattaatg |
1035 |
Q |
| |
|
|||| |||| ||||| ||||| |||||| |
|
|
| T |
38356784 |
caacagaaaggcctacaaaggagttaatg |
38356756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1100 - 1190
Target Start/End: Complemental strand, 19592771 - 19592681
Alignment:
| Q |
1100 |
cacaagctttgtaccaaatagtaattttgttaactcttcaattcaaaggtgaggatatttttggtgtgacatcaaaggtaaatgacacatt |
1190 |
Q |
| |
|
||||||| |||||||||||| |||| |||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
19592771 |
cacaagccttgtaccaaataccaattatgttgacttttcaattcaaaggtgacaataattttggtgtgacactaaaggtaaacgacacatt |
19592681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 934 - 972
Target Start/End: Complemental strand, 19592824 - 19592786
Alignment:
| Q |
934 |
gaagtaccattaacagcagttcaattattatgggtgaat |
972 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
19592824 |
gaagtaccattaataacagttcaattattatgggtgaat |
19592786 |
T |
|
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Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 1101 - 1186
Target Start/End: Original strand, 29475752 - 29475837
Alignment:
| Q |
1101 |
acaagctttgtaccaaatagtaattttgttaactcttcaattcaaaggtgaggatatttttggtgtgacatcaaaggtaaatgaca |
1186 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
29475752 |
acaagctttgttccaaatagtaattttgttaactcttcaatttaaaggtgatattatttttggtatgacatcaaaggtaaatgaca |
29475837 |
T |
|
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Target: chr5 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 21847717 - 21847622
Alignment:
| Q |
8 |
ggagtagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaa |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
21847717 |
ggagaagcagagatggtactaagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattcgaa |
21847622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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