View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_13 (Length: 527)
Name: NF8061_high_13
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 41031080 - 41030578
Alignment:
| Q |
19 |
ggtacataattattattttcattttgtacgataaggtagagctagtttttattcaagtgtcatgaatattaaagaagagaacaactgtaatattaatatt |
118 |
Q |
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| T |
41031080 |
ggtacataattattattttcattttgtacgataaggtagagctagtttttattcaagtctcatgaatattaaagaagagaacaactgtaatattaatatt |
41030981 |
T |
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| Q |
119 |
actatgcttaactaaaagcaagcaaacatttatttcactttnnnnnnngaggttacaagaaagaaagatactataacttgtaagtgtaaatatagcttgc |
218 |
Q |
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| T |
41030980 |
actatgcttaactaaaagcaagcaaacatttatttcactttaaaaaaagaggttacaagaaagaaagatactataacttgtaagtgtaaatatagcttgc |
41030881 |
T |
|
| Q |
219 |
acatattaaaggagaaaatgtatgatagcctctatgtttgatttcactagttccacactcactatactcgcgttcatatgccaatcaaccgtgatttaat |
318 |
Q |
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| T |
41030880 |
acatattaaaggagaaaatgtatgatagcctctatgtttgatttcactagttccacactcactatactcgcgttcatatgccaatcaacagtgatttaat |
41030781 |
T |
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| Q |
319 |
agaaactacaaactatagctt-gatccttatgcgtatcggaaactgatccaccacaaaaacaaacaactacgcaacattagaaatcgtgacgagccacat |
417 |
Q |
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| T |
41030780 |
agaaactacaaactatagctttgatccttatgcgtatcggaaactgatccaccacaaaaacaaacaactacgcagcattagaaatcgtgacgagccacat |
41030681 |
T |
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| Q |
418 |
ggaccttatcagatcgagaaagcaacctatggtagactgacacagcagcatgagtgatatgcttagccctcccaagaatcttacgattacccttactatt |
517 |
Q |
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| T |
41030680 |
ggaccttatcagatcgagaaagcaacctatggtagactgacacagcagcatgagtgatatgcttagccctcccaggaatcttacgattacccttactatt |
41030581 |
T |
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| Q |
518 |
aca |
520 |
Q |
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| T |
41030580 |
aca |
41030578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 236 - 477
Target Start/End: Complemental strand, 41036450 - 41036214
Alignment:
| Q |
236 |
atgtatgatagcctctatgtttgatttcactagttccacactcactatactcgcgttcatatgccaatcaaccgtgatttaatagaaactacaaactata |
335 |
Q |
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| T |
41036450 |
atgtatgatagcctatatgtttagtttcaca---tctacactcgctattcttgcattcatatgccaatcgactgtgatttaacagaaactataaaatact |
41036354 |
T |
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| Q |
336 |
gctt-gatccttatgcgtatcggaaactgatccaccacaaaaacaaacaactacgcaacattagaaatcgtgacgagccacatggaccttatcagatcga |
434 |
Q |
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| T |
41036353 |
gctttgatccttacacatattggacagtgatctaccgcaaaaagaaaccacga---aacaatagaaatcatgacgagccatgtggaccttatcagaccga |
41036257 |
T |
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| Q |
435 |
gaaagcaacctatggtagactgacacagcagcatgagtgatat |
477 |
Q |
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| T |
41036256 |
gaaagcaatctacaatagactgacacagcagcatgagtaatat |
41036214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 374 - 511
Target Start/End: Complemental strand, 41044816 - 41044675
Alignment:
| Q |
374 |
aaaacaaacaactacgcaacattagaaatcgtgacgagccacatggaccttatcagatcgagaaagcaacctatggtaga----ctgacacagcagcatg |
469 |
Q |
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||||||||||| | ||||||||||||||| | | ||||||||| ||||||||||||||||||| ||| ||||| | | |||||||| ||||||| |
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| T |
41044816 |
aaaacaaacaagtgtgcaacattagaaatcatagcaagccacatgaaccttatcagatcgagaaaacaagctatgaaataaatactgacacaacagcatg |
41044717 |
T |
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| Q |
470 |
agtgatatgcttagccctcccaagaatcttacgattaccctt |
511 |
Q |
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| T |
41044716 |
agtgacatgcttagccttccctagaatcttacaattaccctt |
41044675 |
T |
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