View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_14 (Length: 515)
Name: NF8061_high_14
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 8e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 257 - 497
Target Start/End: Complemental strand, 28989008 - 28988767
Alignment:
| Q |
257 |
ttggcttaatcatgttagtcaaataaaaagaaaaatttaaggtccgtaagttcaactcacttggtagccgagattcaaaatccaaacaccccatttattt |
356 |
Q |
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| T |
28989008 |
ttggcttaatcatgttagtcaaataaaaagaaaaatttaagatccgtaagttcaactcagttggtagccgagattcaaactccaaacaccccatttattt |
28988909 |
T |
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| Q |
357 |
accttaataaagtgagtttctaaccatttaactgattcacaacaatttttaagtataacttacat-cnnnnnnnnnnnnnngagtaagtataacttagat |
455 |
Q |
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| T |
28988908 |
accttaacaaagtgagtttctaaccatttaactgattcacaacaatttttaagtataacttacatccaaaaaaaaaaaaaagagtaagtataacttagat |
28988809 |
T |
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| Q |
456 |
tggttacttactatgttattggaagttgggtcacccaacttc |
497 |
Q |
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| T |
28988808 |
tggttacttactatgttatcggaagttgggacacccaacttc |
28988767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 28989302 - 28989140
Alignment:
| Q |
4 |
tgctgtgtacaacaccgacaatagacgctttgtgcttcccttgatgtatttggaaaacatcattttcaagaattctccaaattggcagaacaataatttt |
103 |
Q |
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| T |
28989302 |
tgctgtgtacaacaccgacaatagacgctttgtgtttcccttgatgtatttggaaaacatcattttcaagaattctccaaattggcagaacaataatttc |
28989203 |
T |
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| Q |
104 |
gtatatcttgcaatataccacttaactttccctgtgatgctacagaagtacataatcacattg |
166 |
Q |
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| T |
28989202 |
gtatatcttgcaatacaccacttaactttccctgtgatgctacagaagtacataatcaaattg |
28989140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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