View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_high_15 (Length: 509)

Name: NF8061_high_15
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_high_15
NF8061_high_15
[»] chr6 (7 HSPs)
chr6 (14-489)||(34770861-34771336)
chr6 (18-172)||(34781214-34781365)
chr6 (18-76)||(11549498-11549556)
chr6 (208-276)||(34795285-34795353)
chr6 (210-276)||(34780505-34780570)
chr6 (292-386)||(34795418-34795512)
chr6 (119-166)||(34777675-34777720)


Alignment Details
Target: chr6 (Bit Score: 472; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 489
Target Start/End: Original strand, 34770861 - 34771336
Alignment:
Q  14 aagaacacactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770861 aagaacacactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgata 34770960  T
Q  114 gtatatgatggaatgcattctactatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataata 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770961 gtatatgatggaatgcattctactatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataata 34771060  T
Q  214 acaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771061 acaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctca 34771160  T
Q  314 gaagtaactctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771161 gaagtaactctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcatt 34771260  T
Q  414 cattcattatttatttacttttgtttctctaataccattagaaaatgaaagagagagaatctcgcttcctacttct 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34771261 cattcattatttatttacttttgtttctctaataccattagaaaatgaaagaaagagaatctcgcttcctacttct 34771336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 34781214 - 34781365
Alignment:
Q  18 acacactactttttcaaataaaa-gatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagta 116  Q
    ||||||||||| ||||||||||| ||| || |||||||||||||||  ||||||||||||||||||  |  |||| |||||||||||||||||||| |||    
T  34781214 acacactacttgttcaaataaaaagattagagataaaatagtaattttaaaattaagatgtttcat--ggaggaaagaaaaataataagagatgatggta 34781311  T
Q  117 tatgatggaatgcattctactatataatccattttattccattcaatttttacaaa 172  Q
    || |||| |||||||| || ||||  ||||||||||||||||||||||||||||||    
T  34781312 tacgatgaaatgcattatattata--atccattttattccattcaatttttacaaa 34781365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 11549498 - 11549556
Alignment:
Q  18 acacactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatg 76  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11549498 acacactactttttcaaataaaagatcagggatagaatagtaattacaaaattaagatg 11549556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 34795285 - 34795353
Alignment:
Q  208 ataataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact 276  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||| ||||    
T  34795285 ataataacaataataaatagagccaacgaagtttgactcaattgataaaaaataacaaaaaatttaact 34795353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 34780505 - 34780570
Alignment:
Q  210 aataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact 276  Q
    |||||||| ||||||||||  || ||||||| || ||||||||||||||||||||||||||||||||    
T  34780505 aataacaaaaataaaaagaatta-cgaagttcgactcaattgataaaaaataactaaaaattcaact 34780570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 292 - 386
Target Start/End: Original strand, 34795418 - 34795512
Alignment:
Q  292 aatacatctttagagagtctcagaagtaactctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattg 386  Q
    ||||| ||||||||||| ||   | ||| |||||| || ||||||||||||||||||| |||| ||||||| |||  ||||||||||||||||||    
T  34795418 aatacctctttagagagactataaggtagctctaactcaattaagttgcgaaatccgactcatttaaacttttttgtgccaaataagtagcattg 34795512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 34777675 - 34777720
Alignment:
Q  119 tgatggaatgcattctactatataatccattttattccattcaatttt 166  Q
    ||||||||| |||||||||||   ||||||||||||||||||||||||    
T  34777675 tgatggaatccattctactatc--atccattttattccattcaatttt 34777720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University