View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_high_20 (Length: 460)

Name: NF8061_high_20
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_high_20
NF8061_high_20
[»] chr4 (4 HSPs)
chr4 (18-460)||(105998-106440)
chr4 (121-277)||(166715-166871)
chr4 (121-192)||(131919-131991)
chr4 (404-448)||(166547-166591)
[»] chr7 (3 HSPs)
chr7 (380-460)||(13054475-13054555)
chr7 (140-225)||(13055035-13055120)
chr7 (227-317)||(13054763-13054856)
[»] chr3 (2 HSPs)
chr3 (122-210)||(12135305-12135393)
chr3 (227-326)||(12135541-12135640)
[»] scaffold0013 (3 HSPs)
scaffold0013 (140-217)||(90221-90298)
scaffold0013 (227-323)||(90399-90498)
scaffold0013 (396-445)||(90709-90758)
[»] chr8 (11 HSPs)
chr8 (227-312)||(5652560-5652645)
chr8 (227-317)||(5687139-5687229)
chr8 (140-223)||(5652169-5652252)
chr8 (227-320)||(5666132-5666226)
chr8 (133-223)||(5686918-5687008)
chr8 (404-454)||(5666314-5666364)
chr8 (404-454)||(5687384-5687434)
chr8 (227-317)||(5719256-5719346)
chr8 (404-454)||(5719500-5719550)
chr8 (140-218)||(5601508-5601586)
chr8 (140-218)||(5639034-5639112)


Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 106440 - 105998
Alignment:
Q  18 gtatcagtagacattatttataaaaagataatgtgttctgtgattatataatgctaatgactcctgtctagttttttaagaccacattcattactaaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  106440 gtatcagtagacattatttataaaaagataatgtgttctgtgattatataatgctaatgacacctgtctagttttttaagaccacattcattactaaatt 106341  T
Q  118 agtatatcaaaggattgagataaacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106340 agtatatcaaaggattgagataaacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtc 106241  T
Q  218 tctctctgtctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgcaatatt 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  106240 tctctctgcctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatcggcttccttcgagaggtacatatatctgcattatt 106141  T
Q  318 attatttagcaagacattattattgtcaattcattttgaagtcagcgaatgattggtaactaattagtaataaatactcaattatgaaccttttttgggc 417  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106140 attatttagcaagacattattattgtcaattcatgttgaagtcagcgaatgattggtaactaattagtaataaatactcaattatgaaccttttttgggc 106041  T
Q  418 ttgaaagatagctctccccccacccaccatcctctctctgtgt 460  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  106040 ttgaaagatagctctccccccacccaccatcctctctctgtgt 105998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 121 - 277
Target Start/End: Complemental strand, 166871 - 166715
Alignment:
Q  121 atatcaaaggattgagataaacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtctct 220  Q
    ||||||||| | | |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  166871 atatcaaagaacttagatgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtctct 166772  T
Q  221 ctctgtctggccggcatgaattaaacccataagagcccatgcagtatgtacaacatt 277  Q
    ||||| ||| ||  ||||||||||| ||||||||||||||||||| |||||||||||    
T  166771 ctctgcctgaccaccatgaattaaagccataagagcccatgcagtttgtacaacatt 166715  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 131991 - 131919
Alignment:
Q  121 atatcaaaggattgagataaacctgttggggccaatcgccttcttccaact-gggaattgatgagcaattttg 192  Q
    |||||||||||||||| | ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  131991 atatcaaaggattgagttgaaccttttgggaccaatcgccttcttccaactggggaattgatgagcaattttg 131919  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 404 - 448
Target Start/End: Complemental strand, 166591 - 166547
Alignment:
Q  404 aaccttttttgggcttgaaagatagctctccccccacccaccatc 448  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  166591 aaccttttttgggcatgaaagatagctctccccccacccaccatc 166547  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 380 - 460
Target Start/End: Complemental strand, 13054555 - 13054475
Alignment:
Q  380 attagtaataaatactcaattatgaaccttttttgggcttgaaagatagctctccccccacccaccatcctctctctgtgt 460  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  13054555 attagtaataattactcaattatgaaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgt 13054475  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 13055120 - 13055035
Alignment:
Q  140 aacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtctctctctg 225  Q
    |||||||||||||||||| || |||| |||||||||||||||||| |||||||||| |||||| ||||||||| ||||||| ||||    
T  13055120 aacctgttggggccaatcaccctctttcaactgggaattgatgagaaattttgcagaacgatgaagaggagtaaggtctctttctg 13055035  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 13054856 - 13054763
Alignment:
Q  227 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggat--ct-gcttccttcgagaggtacatatatctgcaatatt 317  Q
    |||||| |||| |||||||| ||| ||| |||||||||| ||||||||||| |||  || ||||||||| ||||||| |||| |||||| ||||    
T  13054856 ctggccagcataaattaaactcatgagaccccatgcagtttgtacaacatttgattgctggcttccttcaagaggtatatatttctgcattatt 13054763  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 12135305 - 12135393
Alignment:
Q  122 tatcaaaggattgagataaacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggag 210  Q
    ||||||| ||||||||| ||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||| || |||||||    
T  12135305 tatcaaatgattgagatgaacctgttgtggccaatcaccctcttccaactgagaattgatgagcaattttgcagcacggtgaagaggag 12135393  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 227 - 326
Target Start/End: Original strand, 12135541 - 12135640
Alignment:
Q  227 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgcaatattattatttag 326  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||||| ||| ||||| |||||||| |||||||  |||||||||| ||||| |||||||    
T  12135541 ctggccagcatgaattaaacccagaagagcccatgcagtctgtacaagatttgatctacttccttcaagaggtatgtatatctgcattattaatatttag 12135640  T

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Target: scaffold0013 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 90221 - 90298
Alignment:
Q  140 aacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtc 217  Q
    |||||||||||||||||| |||| || |||||| ||||| || |||||||||||||||||||||||||||||||||||    
T  90221 aacctgttggggccaatctccttgtttcaactgagaatttataagcaattttgcagcacgatggagaggagtagggtc 90298  T

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Target: scaffold0013; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 323
Target Start/End: Original strand, 90399 - 90498
Alignment:
Q  227 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattgga-tc--tgcttccttcgagaggtacatatatctgcaatattattatt 323  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||   ||||||||| ||||||||||||| ||||| ||||||||||    
T  90399 ctggccagcatgaattaaacccataagagcccatgcagtttgtacaacatttgactcctggcttccttcaagaggtacatatacctgcattattattatt 90498  T

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Target: scaffold0013; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 445
Target Start/End: Original strand, 90709 - 90758
Alignment:
Q  396 caattatgaaccttttttgggcttgaaagatagctctccccccacccacc 445  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||| |||||    
T  90709 caattatgaacctttttagggcatgaaagatagctctctccccaaccacc 90758  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 5652560 - 5652645
Alignment:
Q  227 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgca 312  Q
    |||||| |||||||||||||||||||||||||||||||| || |||| ||| ||||  | ||||||||||||||||||| ||||||    
T  5652560 ctggccagcatgaattaaacccataagagcccatgcagtttgaacaatatttgatcgacctccttcgagaggtacatatgtctgca 5652645  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 5687139 - 5687229
Alignment:
Q  227 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgcaatatt 317  Q
    ||||||||||||||| ||| |||| ||||||||||| || ||||||| ||| |||  ||||||||| ||||||||||||||||||| ||||    
T  5687139 ctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcattatt 5687229  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 5652169 - 5652252
Alignment:
Q  140 aacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtctctctc 223  Q
    ||||||||||||||| || || ||||| || |||||||||||||  ||||||||||||||||| |||| ||| |||||| ||||    
T  5652169 aacctgttggggccagtcaccctcttctaattgggaattgatgattaattttgcagcacgatgaagagtagttgggtctatctc 5652252  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 320
Target Start/End: Original strand, 5666132 - 5666226
Alignment:
Q  227 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgca-atattatt 320  Q
    ||||||||||||||| ||| |||| ||||||||||  || ||||||| ||| |||  ||||||||| |||||| |||||||||||| ||||||||    
T  5666132 ctggccggcatgaatcaaagccattagagcccatgatgtctgtacaatatttgattggcttccttcaagaggtgcatatatctgcatatattatt 5666226  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 5686918 - 5687008
Alignment:
Q  133 tgagataaacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtctctctc 223  Q
    ||||||||||||||||||||||||| || || ||    |||  ||||||||  |||||| |||||||||| ||||||||||||||||||||    
T  5686918 tgagataaacctgttggggccaatcaccctcctcttgttggagattgatgattaattttacagcacgatgaagaggagtagggtctctctc 5687008  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 5666314 - 5666364
Alignment:
Q  404 aaccttttttgggcttgaaagatagctctccccccacccaccatcctctct 454  Q
    ||||||||||| ||||||||||| |||||| ||||| ||||||||||||||    
T  5666314 aaccttttttgagcttgaaagatggctctctccccatccaccatcctctct 5666364  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 5687384 - 5687434
Alignment:
Q  404 aaccttttttgggcttgaaagatagctctccccccacccaccatcctctct 454  Q
    ||||||||||| || |||||||| |||||| ||||||||||||||||||||    
T  5687384 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctct 5687434  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 5719256 - 5719346
Alignment:
Q  227 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgcaatatt 317  Q
    |||||| |||||||| ||| | || ||||||||||  || ||||||| ||| |||  ||||||||| ||||||||||||||||||| ||||    
T  5719256 ctggccagcatgaatcaaagctattagagcccatgatgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcattatt 5719346  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 5719500 - 5719550
Alignment:
Q  404 aaccttttttgggcttgaaagatagctctccccccacccaccatcctctct 454  Q
    ||||||||||| || |||||||| |||||| ||||||||||||||||||||    
T  5719500 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctct 5719550  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 5601586 - 5601508
Alignment:
Q  140 aacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtct 218  Q
    |||||||||||||||  |||| ||||| |  || |||||||| |  || |||||||||||||| |||||||||||||||    
T  5601586 aacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtct 5601508  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 5639034 - 5639112
Alignment:
Q  140 aacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtct 218  Q
    |||||||||||||||  |||| ||||| |  || |||||||| |  || |||||||||||||| |||||||||||||||    
T  5639034 aacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtct 5639112  T

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