View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_21 (Length: 430)
Name: NF8061_high_21
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_21 |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 25 - 430
Target Start/End: Complemental strand, 35300381 - 35299973
Alignment:
| Q |
25 |
ttatataaatatatattgttatggtctcaacttctgataaaaatgttttgtctcaagaatgaaactataaaagtctaaacatagtttatttataggattg |
124 |
Q |
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||||||||||||||| | ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35300381 |
ttatataaatatataccatcatggtctcaacttttaataaaaatgttctgtctcaagaatgaaactataaaagtctaaacatagtttatttataggattg |
35300282 |
T |
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| Q |
125 |
aatgttgttgttgtaacttctctggccaaactaaaaatataactatttagttgtttttgtatttgactcataaca---tttaagtatataagataagata |
221 |
Q |
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| T |
35300281 |
aatgttgttgttgtaacttctctggccaaactaaaaatataattgtttagttgtttttgtatttgactcataacaacatttaagtatataagataagata |
35300182 |
T |
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| Q |
222 |
agaaactcaaatcattattatacttgaatcagtatccttcctatatctttgaatttgaattctcatatataaatttctttgagaacttagtgttgtgaag |
321 |
Q |
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| T |
35300181 |
agaaactcaaatcattattatacttgaatcattttccttcctatatctttgaacttgaattctcatatataaatttctttaagaacttagtgttgtgaag |
35300082 |
T |
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| Q |
322 |
gaaaatgaatagtaatataacaagagaaccaggcttatatgtctcagttacataaatgaatgttagtgctacagccttcaaagtttgttttgttactcca |
421 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||| |
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| T |
35300081 |
gaaaatgaatagtaatataacaagagaaccaggtttatatgtctcagttacacaaatggatgttagtgctacagccttcaaagtttgttctgttgctcca |
35299982 |
T |
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| Q |
422 |
ccaaatatt |
430 |
Q |
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| T |
35299981 |
ccaaatatt |
35299973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 35282357 - 35282121
Alignment:
| Q |
18 |
actgtatttatataaatatatattgttatggtctcaacttctgataaaaatgttttgtctcaagaatgaaactataaaagtctaaacatagtttatttat |
117 |
Q |
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| T |
35282357 |
actgtatttatataaatatatattgttatggtctcaacttctgataaaaatgttttgtctcaagaatgaaactataaaagtctaaacatagtttatttat |
35282258 |
T |
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| Q |
118 |
aggattgaatgttgttgttgtaacttctctggccaaactaaaaatataactatttagttgtttttgtatttgactcat---aacatttaagtatataaga |
214 |
Q |
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| T |
35282257 |
aggattgaatgttgttgttgtaacttctcttgacaaactaaaaatataactatttagttgtttttgtatttgactcataacaacatttaagtatataaga |
35282158 |
T |
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| Q |
215 |
taagataagaaactcaaatcattattatacttgaatc |
251 |
Q |
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| T |
35282157 |
taagataagaaattcaaatcattattatacttgaatc |
35282121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 430
Target Start/End: Original strand, 5621273 - 5621683
Alignment:
| Q |
20 |
tgtatttatataaatatatattgttatggtctcaacttctgataaaaatgttttgtctcaagaatgaaactataaaagtctaaacatagtttatttatag |
119 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
5621273 |
tgtatttatataaatatataccgttatgatctcaacttctgataaaaatgttttgtcttaagaataaaactataaaagtctaaacatagtttatttatat |
5621372 |
T |
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| Q |
120 |
gattgaatgttgttgttgtaacttctctggccaaactaaaaatataactatttagttgtttttgtatttgactcat---aacatttaagtatataagata |
216 |
Q |
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| T |
5621373 |
gattgaatgttgttgtt---acctctctgcccaaactaaaaatatatatgtttagttgtttttgtttttgactcataggaacatttaagtat-----ata |
5621464 |
T |
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| Q |
217 |
agataagaaactcaaatcattattatac-----------ttgaatcagtatccttcctatatctttgaatttgaattctcatatataaatttctttgaga |
305 |
Q |
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| T |
5621465 |
agataagaaagtcaaatcattattatgcttatacggctattgaatcattttcattcttatatctttgaatttgaattctcatatataattatctttgaga |
5621564 |
T |
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| Q |
306 |
acttagtgttgtgaaggaaaatgaatagtaatataacaagagaaccaggcttatatgtctcagttacataaatgaatgttagtgctacagccttcaaagt |
405 |
Q |
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| T |
5621565 |
acttagtgttgtgaaggaaaatgaatagtaatataacaagagaaccaggcttatatgtctcagttgcacaaataga------tgctacaaccttcaatgt |
5621658 |
T |
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| Q |
406 |
ttgttttgttactccaccaaatatt |
430 |
Q |
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||||| |||| |||||||||||||| |
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| T |
5621659 |
ttgttctgttgctccaccaaatatt |
5621683 |
T |
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