View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8061_high_23 (Length: 418)
Name: NF8061_high_23
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 28720066 - 28719775
Alignment:
| Q |
1 |
actacgtggtaatggtgttgataaggctgagtgaggaagtgataaagatgaagataaatgtttgaagtcagattcagaataccatttttctctcactaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28720066 |
actacgtggtaatggtgttgataaggctgagtgaggaagtgataaagatgaagataaatgtttgaagtcagattcagattaccatttttctctcactaaa |
28719967 |
T |
|
| Q |
101 |
atggtggtaattcacatctttccctgtcatagttattaatcctaattttattttctctcttaaacccctaaccatccttagtacgcttaggaaaactcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28719966 |
atggtggtaattcacatctttccctgtcatagttattaatcctaattttattttctctcttaaacccctaaccatccttagtacgcttaagaaaactcct |
28719867 |
T |
|
| Q |
201 |
aattagtcactagttgctattctaaattttttgatattacgcttgcccaatggagtgacatgcaaagtaacttcttttataaaacatagaaa |
292 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28719866 |
aattagtcactagttggtattctaaattttttgatattacgcttgcccaatggagtgacatgcaaagtaacttcttttataaaacatagaaa |
28719775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 46 - 281
Target Start/End: Complemental strand, 28713004 - 28712779
Alignment:
| Q |
46 |
agatgaagataaatgtttgaagtcagattcagaataccatttttctctcactaaaatggtggtaattcacatctttccctgtcatagttattaatcctaa |
145 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |||| |||||||| ||||| |
|
|
| T |
28713004 |
agatgaagataaatgattgaagtcagattcaaattaccatttttctctcactaaaatggt---aattcacatcttaccctatcatagtt------cctaa |
28712914 |
T |
|
| Q |
146 |
ttttattttctctcttaaacccctaaccatccttagtacgcttaggaaaactcctaattagtcactagttgctattctaaattttttgatattacgcttg |
245 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| |||||||||| || |||||||| ||| |
|
|
| T |
28712913 |
ttttattttctttcttaaacccctaaccatccttagtacactaaggaaaactcctaattaggcactagttggtattctaaatgttcggatattacactta |
28712814 |
T |
|
| Q |
246 |
cccaatggagtgacatgcaaagtaacttcttttata |
281 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28712813 |
cccaatggagtgacatgcaaa-taacttcttttata |
28712779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 290 - 418
Target Start/End: Complemental strand, 28719731 - 28719605
Alignment:
| Q |
290 |
aaactttggatgctatcttgatttattatattcatgaatttgaaatctaacatatatatattagccaaagatttgctatcgtttagaactcgtatgaaat |
389 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28719731 |
aaactttgcatgctatcttgatttattattt--atgaatttgaaatctaacatatatatattagccaaagatttgctatcgtttagaactcgtatgaaat |
28719634 |
T |
|
| Q |
390 |
tcaacaatattatacttcttttgagtttc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28719633 |
tcaacaatattatacttcttttgagtttc |
28719605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 28703636 - 28703554
Alignment:
| Q |
326 |
aatttgaaatctaacatatatatattagccaaagatttgctatcgtttagaactcgtatgaaattcaacaatattatacttcttt |
410 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||| ||||||||| | |||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
28703636 |
aatttgaaacctaacatatatatc--agctaaatatttgctataatctagaactcatatgaaattcaacaatattatacctcttt |
28703554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University