View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_24 (Length: 408)
Name: NF8061_high_24
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_24 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 45961036 - 45961411
Alignment:
| Q |
16 |
atcatttccaaaaacttctcatccttgcgaagttcttgtttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctacca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45961036 |
atcatttccaaaaacttctcatccttgcgaagttcttgtttggaataacaattaccaatattttctctattttcttcaagaaaagctttatattctacca |
45961135 |
T |
|
| Q |
116 |
aagctaaagtttgtttatttgacaaacgtttccaaaatgcattaaagtacctttgtttttgtttctcttgatttacttctggattatgactgtgaaaagg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45961136 |
aagctaaagtttgtttatttgacaaacgtttccaaaatgcatgaaagtagctttgtttttgtttctcttgatttacttctggattatgactgtgaaaagg |
45961235 |
T |
|
| Q |
216 |
acctattgagataaactttggtgtataagcatcttcattcaacttcagaagatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45961236 |
acctattgagataaactttggtgtataagcatcttcattcaacttcagaagatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttca |
45961335 |
T |
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| Q |
316 |
atgctttctggaatgatgattatgtgctgaatctatggtgtataaattgcaaatccctaatatgaaaatataaaaa |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45961336 |
atgctttctggaatgatgattatgtgctgaatctatggtgtataaattgcaaatccctaatatgaaaatataaaaa |
45961411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 142636 - 142305
Alignment:
| Q |
16 |
atcatttccaaaaacttctcatccttgcgaagttcttgtttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctacca |
115 |
Q |
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|||||||||||||||||||||||| | | |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
142636 |
atcatttccaaaaacttctcatccgtacaaagttcttgtttggaataacaattacaaatattttttcggttttcttcaagaaaagctttatattgtacca |
142537 |
T |
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| Q |
116 |
aagctaaagtttgtttatttgacaaacgtttccaaaatgcattaaagtacctttgtttttgtttctcttgatttacttctggattatgactgtgaaaagg |
215 |
Q |
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||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||| |||||||||||||||| || |||||| |||||||||||||| |
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| T |
142536 |
aagctaaagtttgtttattagataaacgtttccaaaatgcatgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtgaaaagg |
142437 |
T |
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| Q |
216 |
acctattgagataaactttggtgtataagcatcttcattcaacttcagaagatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142436 |
acctattgagataaactttggtgtataagcatcttcattcaacttcagaacatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttca |
142337 |
T |
|
| Q |
316 |
atgctttctggaatgatgattatgtgctgaat |
347 |
Q |
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||| ||||||||||| |||||||||||||||| |
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| T |
142336 |
atgatttctggaatgttgattatgtgctgaat |
142305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 128 - 391
Target Start/End: Complemental strand, 292693 - 292434
Alignment:
| Q |
128 |
gtttatttgacaaacgtttccaaaatgcattaaagtacctttgtttttgtttctcttgatttacttctggattatgactgtgaaaaggacctattgagat |
227 |
Q |
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|||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||| ||| || ||||||||||||| ||||||||||||||| |
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| T |
292693 |
gtttatttgacaaatgtttccaaaatg----aaagtacttttgtttctgtttctcttgatttagttcagggttatgactgtgaagaggacctattgagat |
292598 |
T |
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| Q |
228 |
aaactttggtgtataagcatcttcattcaacttcagaagatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgctttctgga |
327 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
292597 |
aaactttggtgtgtaagcatcttcattcaacttcagaagatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgatctctgga |
292498 |
T |
|
| Q |
328 |
atgatgattatgtgctgaatctatggtgtataaattgcaaatccctaatatgaaaatataaaaa |
391 |
Q |
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||| |||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| |
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| T |
292497 |
atgttgattatgtgctgaatctgtggtttataaattgcaaatcactaatatgaaaatataaaaa |
292434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 297841 - 297724
Alignment:
| Q |
16 |
atcatttccaaaaacttctcatccttgcgaagttcttgtttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctacca |
115 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
297841 |
atcatttccaaaagcttctcatccttgcaaagttcttgtttggaataaaaattaccaatattttctctgttttcttcaagaaaagctttatattgtacca |
297742 |
T |
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| Q |
116 |
aagctaaagtttgtttat |
133 |
Q |
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|||||||||||||||||| |
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| T |
297741 |
aagctaaagtttgtttat |
297724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 27123807 - 27123928
Alignment:
| Q |
55 |
ttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctaccaaagctaaagtttgtttatttgacaaacgtttccaaaatg |
154 |
Q |
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||||||||||| |||| |||||||| ||||||| |||||| |||||||||||| | ||||||| ||||||||||| |||| ||||||||||| |
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| T |
27123807 |
ttggaataacagttacttatattttcactgttttattcaaggaaagctttatatcgtcccaaagcc------tgtttatttgataaacatttccaaaatg |
27123900 |
T |
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| Q |
155 |
cattaaagtacctttgtttttgtttctc |
182 |
Q |
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|| ||||||| ||||||| |||||||| |
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| T |
27123901 |
aatgaaagtacttttgtttgtgtttctc |
27123928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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