View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_29 (Length: 371)
Name: NF8061_high_29
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 23438125 - 23438004
Alignment:
| Q |
1 |
tagttaattagaccattaatagttgtattacatagttaattttgaccaccatctgtaatttcttctcaagtaattttctcaatgagaatatttttacctt |
100 |
Q |
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| T |
23438125 |
tagttaattagaccattaatagttgtattacatagttaattttgaccaccatctgtaatttcttctcaagtaattttctcaatgagaatatttttacatt |
23438026 |
T |
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| Q |
101 |
tctaatatggtatcagaacata |
122 |
Q |
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| T |
23438025 |
tctaatatggtattagaacata |
23438004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 138 - 321
Target Start/End: Complemental strand, 23437960 - 23437775
Alignment:
| Q |
138 |
ctaaattctcgactccatggatgattattc--ctt-taaatctgatgtagaatcatcattgattcctgcttctccgcttcgaaaccaacctatcaattat |
234 |
Q |
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||||||||| ||||||||| |||||| ||| ||| ||||| ||||||||||||||| | | ||||||||||||||||||||||||||| ||||||| || |
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| T |
23437960 |
ctaaattcttgactccatg-atgattcttcttcttctaaatttgatgtagaatcatcgtcgtttcctgcttctccgcttcgaaaccaacatatcaatgat |
23437862 |
T |
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| Q |
235 |
tttactaaatctccttattatcttcatcctgctgaaaatctaggctctgttttgatttcacctcagttgaataaaacaagttaacat |
321 |
Q |
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| T |
23437861 |
tttactcaatctcctaattatcttcatcctactgaaaatctaggctctgatttgatttcacctcaactgaataaaacaaattaacat |
23437775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 23430270 - 23430161
Alignment:
| Q |
13 |
ccattaatagttgtattacatagttaattttgaccaccatctgtaatttcttctcaagtaattttctcaatgagaatatttttacctttctaatatggta |
112 |
Q |
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| T |
23430270 |
ccattaatagttttattacagagttaattttgaccactctctgtaatttcttctcaagcaattttcccaaagagaatacttttacatttcaaatatggta |
23430171 |
T |
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| Q |
113 |
tcagaacata |
122 |
Q |
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| T |
23430170 |
ttagaacata |
23430161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 342
Target Start/End: Complemental strand, 23430050 - 23429912
Alignment:
| Q |
203 |
cttctccgcttcgaaaccaacctatcaattattttactaaatctccttattatcttcatcctgctgaaaatctaggctctgttttgatttcacctcagtt |
302 |
Q |
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||||||| ||| ||||||||||| ||||| |||||||| ||||||| | ||||||||||||||||| |||| ||||| |||||| |||||||| | || |
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| T |
23430050 |
cttctccactttgaaaccaacctgtcaatgattttactcaatctccatgttatcttcatcctgctg-aaatataggccaagttttggtttcaccttaatt |
23429952 |
T |
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| Q |
303 |
gaataaaacaagttaacattcatggagctgcaacatgaaa |
342 |
Q |
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| T |
23429951 |
aaataacacaaattaccattcatggagccgcaatatgaaa |
23429912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 550538 - 550461
Alignment:
| Q |
187 |
tcatcattgattcctgcttctccgcttcgaaaccaacctatcaattattttactaaatctccttattatcttcatcct |
264 |
Q |
| |
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|||||| |||||||| ||||| | |||| |||| ||| | |||||||||||||| |||||| ||||||||||||||| |
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| T |
550538 |
tcatcactgattcctacttcttcacttcaaaactaacatgtcaattattttactctatctccatattatcttcatcct |
550461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 203 - 354
Target Start/End: Original strand, 3811517 - 3811668
Alignment:
| Q |
203 |
cttctccgcttcgaaaccaacctatcaattattttactaaatctccttattatcttcatcctgctgaaaatctaggctctgttttgatttcacctcagtt |
302 |
Q |
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| T |
3811517 |
cttctccacttccaacccaacctgtcaatgattttacccaatctccatattatcttcatcctggtgagaatccaggctctgttttgatttcatctcaatt |
3811616 |
T |
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| Q |
303 |
gaataaaacaagttaacattcatggagctgcaacatgaaacgtgcgctcata |
354 |
Q |
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||||| || | ||| |||||||||||| |||||||||||| ||| |||||| |
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| T |
3811617 |
aaataacaccaattaccattcatggagccgcaacatgaaacatgctctcata |
3811668 |
T |
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