View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8061_high_3 (Length: 764)
Name: NF8061_high_3
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 642; Significance: 0; HSPs: 17)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 24 - 750
Target Start/End: Original strand, 30384569 - 30385315
Alignment:
| Q |
24 |
cgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtattgttgtat--------- |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30384569 |
cgtgcaagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtattgttttattatcttcac |
30384668 |
T |
|
| Q |
115 |
-----------gagttgcattttcgtagaattttaatcaacagttgcatcttttgtccggaaatactaacactaatcttgtattcagtataagcctcaag |
203 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30384669 |
actcatgatatgagtttcattttcgtagaattttaatcaagagttgcatcttttgtccggaaattctaacactaatcttgtattcactataagcctcaag |
30384768 |
T |
|
| Q |
204 |
acaaactggttttgttgtttatcgagactattttgttgcttggccttaacatgtaacattaatctttttgtgataggtcaccatgattttgtatgaggtt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30384769 |
acaaactggttttgttgtttatcgagacttttttgttgcttggccttaacatgtaacattaatctttttgtgataggtcaccatgattttgtatgaggtt |
30384868 |
T |
|
| Q |
304 |
cttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacactacctgctggagtggagattttcttac |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30384869 |
cttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacactacctgctggagtggagattttcttac |
30384968 |
T |
|
| Q |
404 |
caattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatgg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30384969 |
caattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttttggaggaatttccaaagcaacaaatgg |
30385068 |
T |
|
| Q |
504 |
aagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaa |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30385069 |
aagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaa |
30385168 |
T |
|
| Q |
604 |
catttctcatttgaactttcaccgacctatgctcatgctccatcctcgatgattactcttcagccacaatatggcgctcatattattatacgcaaactgg |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30385169 |
catttctcatttgaactttcaccgacctatgctcatgctccatcctcgatgattactcttcagccacaatatggcgctcatattattatacgcaaactgg |
30385268 |
T |
|
| Q |
704 |
aaacataaaaccattattatagtacactctcaagttgtgtattttat |
750 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
30385269 |
aaacataaaaccattattatagtacgctctcaaggtgtgtattttat |
30385315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 256 - 713
Target Start/End: Original strand, 30395573 - 30396030
Alignment:
| Q |
256 |
gtaacattaatctttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatg |
355 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||| ||||||||| ||||||| |
|
|
| T |
30395573 |
gtaacataaatctttttgtaacaggtcaccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgtgaaagata |
30395672 |
T |
|
| Q |
356 |
tgaaacttggaaatctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaat |
455 |
Q |
| |
|
||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |
|
|
| T |
30395673 |
tgaaacttggaaacctgacattacctgctggagtggaggttttcttaccaattcttttgattcatcatgactgcaaactatggggcgatgatgctaaaat |
30395772 |
T |
|
| Q |
456 |
gttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaa |
555 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30395773 |
gttcaatcctgagagattttccggaggaatttctaaagcaacaaatggtagagtttcattttttccatttggatggggtccaagaatttgcattggacaa |
30395872 |
T |
|
| Q |
556 |
aacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatga |
655 |
Q |
| |
|
|||||||| |||||||||||||| |||||| || || |||||||||||||||| |||||||||||||| | |||||||||||||||||||| | ||| |
|
|
| T |
30395873 |
aacttttccctaatggaagcaaagatggcattgtcaatgattttgcaacatttttcatttgaactttcctcaacctatgctcatgctccatcaactgtga |
30395972 |
T |
|
| Q |
656 |
ttactcttcagccacaatatggcgctcatattattatacgcaaactggaaacataaaa |
713 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30395973 |
ttactcttcagccacaatatggtgctcatattattatacgcaaagtggaaacataaaa |
30396030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 278 - 711
Target Start/End: Original strand, 30476368 - 30476801
Alignment:
| Q |
278 |
aggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattg-gccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacac |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||| ||| | | ||| |||||| | | | |||||||| ||||||||||| |||||| |
|
|
| T |
30476368 |
aggtcaccatgattttgtatgaggttcttagattatacccacccgcaatcgcgactt-ctcgaagtactcacaaagatgtcaaacttggaaacctaacat |
30476466 |
T |
|
| Q |
377 |
tacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttc |
476 |
Q |
| |
|
|||| || |||||| | ||| |||||| || ||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
30476467 |
taccagccggagtgcaaattaccttaccgatagttttggttcaccatgactccgaactatggggtgaagatgctaaggtgttcaatcctgagagattttc |
30476566 |
T |
|
| Q |
477 |
tggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaatggaagca |
576 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
30476567 |
tggaggaatttccaaagcaacaaatgggagattttcattttttccatttggagggggtccaagaatttgcattggacaaaatttttccatgttggaagca |
30476666 |
T |
|
| Q |
577 |
aaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatgattactcttcagccacaatatg |
676 |
Q |
| |
|
|| ||||||||| || ||||||| || | ||||||||||||||||| || | ||||||||||||||| || ||||||| |||||||| |||||| |
|
|
| T |
30476667 |
aagatggcaatggcaatgattttaaaaaaattctcatttgaactttctccatcttatgctcatgctccaacccaagtgattacccttcagcctaaatatg |
30476766 |
T |
|
| Q |
677 |
gcgctcatattattatacgcaaactggaaacataa |
711 |
Q |
| |
|
| | |||| ||||| |||| ||| ||| ||||||| |
|
|
| T |
30476767 |
gtgttcatcttattctacgtaaagtggcaacataa |
30476801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 284 - 713
Target Start/End: Complemental strand, 23783613 - 23783184
Alignment:
| Q |
284 |
ccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacactacctgc |
383 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||| |||| ||| |||||||||| |||||||| ||| | ||||||||| | | ||| || ||| |
|
|
| T |
23783613 |
ccatgattttgtatgaggttttgaggttgtaccctcctgtaaccggcgttgctcgaaaagttgagaatgatataaaacttggagacttgacattatatgc |
23783514 |
T |
|
| Q |
384 |
tggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttctggagga |
483 |
Q |
| |
|
|||| ||||| ||| | | |||||| |||||||||||||||| || ||||||||||||||||||||||| || ||||||||||| ||||||||||| ||| |
|
|
| T |
23783513 |
tggaatggaggtttacatgccaattgttttgattcaccatgattgtgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtgga |
23783414 |
T |
|
| Q |
484 |
atttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaatggaagcaaaaatgg |
583 |
Q |
| |
|
||||||||||||||||| || ||| |||||| |||||| |||||| ||||||| |||| |||||||||||||||||||| || |||||||||| |||| |
|
|
| T |
23783413 |
atttccaaagcaacaaacggtagattttcatattttccgtttggagcgggtcctagaatctgcattggacaaaacttttccctgttggaagcaaagatgg |
23783314 |
T |
|
| Q |
584 |
caatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatgattactcttcagccacaatatggcgctca |
683 |
Q |
| |
|
||||| |||||||||| | |||| |||||||||||||| | || ||||||||||||||||| | || || || ||||||||||| |||| ||||| |
|
|
| T |
23783313 |
caatggcattgattttaaagaatttttcatttgaactttctcaaacatatgctcatgctccatctgtggtgctttctgttcagccacaacatggtgctca |
23783214 |
T |
|
| Q |
684 |
tattattatacgcaaactggaaacataaaa |
713 |
Q |
| |
|
| ||||| |||||||| | |||||||||| |
|
|
| T |
23783213 |
tgttattctacgcaaaatcaaaacataaaa |
23783184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 268 - 641
Target Start/End: Original strand, 30437406 - 30437779
Alignment:
| Q |
268 |
tttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaa |
367 |
Q |
| |
|
|||||| || ||||||| ||||||||||| |||||||||||||||||||| || ||||| | |||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
30437406 |
tttttgagacaggtcacgatgattttgtacgaggttcttaggttatacccaccagtaatcgaacttgctcgaagtgttcacaaagatgtgaaacttggaa |
30437505 |
T |
|
| Q |
368 |
atctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctga |
467 |
Q |
| |
|
| |||||| ||||||| |||||| | ||| |||||| || |||| |||||||||||| ||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
30437506 |
acctaacattacctgccggagtgcaaattaccttaccgatagttttagttcaccatgactccgaactatggggtgacgatgctaaggtgttcaatcctga |
30437605 |
T |
|
| Q |
468 |
aagattttctggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctcta |
567 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||| | |
|
|
| T |
30437606 |
gagattttctgaaggtgttttgaaagcaacaaatggaagaaattcatttgttccatttggagggggtcctagaatttgcattggacagaacttttctatg |
30437705 |
T |
|
| Q |
568 |
atggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgc |
641 |
Q |
| |
|
|||||||||| ||||| || || ||||||| |||| ||||||||| |||||||| || | ||||||||||| |
|
|
| T |
30437706 |
ttggaagcaaagatggcgatagcaatgattttacaacgtttctcattcgaactttctccatcttatgctcatgc |
30437779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 285 - 713
Target Start/End: Original strand, 23768470 - 23768898
Alignment:
| Q |
285 |
catgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacactacctgct |
384 |
Q |
| |
|
||||||||||||||||||| | ||||| |||||||| ||| ||| || ||||||| |||||||| ||| | ||||||||| | | ||| || |||| |
|
|
| T |
23768470 |
catgattttgtatgaggttttgaggttgtaccctcctataaccggcgtttctcgaaaagttgagaatgatataaaacttggagacttgacattatatgct |
23768569 |
T |
|
| Q |
385 |
ggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaa |
484 |
Q |
| |
|
||| |||| ||| ||| || ||| |||||||||||||||| || ||||||||||||||||||||||| || ||||||||||| ||||||||||| |||| |
|
|
| T |
23768570 |
ggaatggatgtttacttgccgattgttttgattcaccatgattgtgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtggaa |
23768669 |
T |
|
| Q |
485 |
tttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaatggaagcaaaaatggc |
584 |
Q |
| |
|
|||||||||||||||| || ||| |||||| |||||| |||||| |||||| |||| ||||||||||| | |||||||||| |||||||||| ||||| |
|
|
| T |
23768670 |
tttccaaagcaacaaacggtagattttcatattttccgtttggagcaggtcctagaatctgcattggacagaccttttctctattggaagcaaagatggc |
23768769 |
T |
|
| Q |
585 |
aatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatgattactcttcagccacaatatggcgctcat |
684 |
Q |
| |
|
|||| |||||||||| || |||| |||||||||||||| | || ||||||||||||||||| | || ||||| ||||||||||| |||| |||||| |
|
|
| T |
23768770 |
aatggcattgattttacagaatttttcatttgaactttctcaaacatatgctcatgctccatctgtggtgcttactgttcagccacaacatggtgctcat |
23768869 |
T |
|
| Q |
685 |
attattatacgcaaactggaaacataaaa |
713 |
Q |
| |
|
||||| |||||||| | |||||||||| |
|
|
| T |
23768870 |
gttattctacgcaaaatcaaaacataaaa |
23768898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 264 - 713
Target Start/End: Original strand, 30484532 - 30484981
Alignment:
| Q |
264 |
aatctttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaactt |
363 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||||||| ||||||||||| || ||| | ||| ||||| || | ||||| || ||| || |
|
|
| T |
30484532 |
aatctttttgtgacagatgaccatgattttgtatgaggttctaaggttatacccaccaataaccgtgcttcctcgagccattcacaaagacgtaaaagtt |
30484631 |
T |
|
| Q |
364 |
ggaaatctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatc |
463 |
Q |
| |
|
||||| |||||| ||||||| ||||| ||||| ||||||||| ||| ||||||||| || |||||||||||||| |||||||| ||||||||| |
|
|
| T |
30484632 |
ggaaacctaacattacctgccggagtccagattaccttaccaatagtttggattcaccacaaccatgaactatggggtgaagatgctaaggtgttcaatc |
30484731 |
T |
|
| Q |
464 |
ctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttc |
563 |
Q |
| |
|
|||| |||||| | | |||| |||| |||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
30484732 |
ctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggagggggtcctagaatttgtattggacaaaacttttc |
30484831 |
T |
|
| Q |
564 |
tctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatgattactctt |
663 |
Q |
| |
|
| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | || | ||||| ||| |
|
|
| T |
30484832 |
catgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaacctatgctcatgctccagcttcagtaattaccctt |
30484931 |
T |
|
| Q |
664 |
cagccacaatatggcgctcatattattatacgcaaactggaaacataaaa |
713 |
Q |
| |
|
||||||| |||| |||||||| ||| | || ||| |||||| |||||| |
|
|
| T |
30484932 |
gagccacagcatggtgctcatatcattttgcgtaaagtggaaatataaaa |
30484981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 278 - 705
Target Start/End: Original strand, 30425128 - 30425555
Alignment:
| Q |
278 |
aggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacact |
377 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| || | ||| | |||||||||| |||| | |||||||||| ||||||||| ||| || | |
|
|
| T |
30425128 |
aggtcactatgattttgtacgaggttcttaggttatacccaccagcaatcgcgcttgctcgaagtgttcacaaagatgtgatacttggaaacctagcatt |
30425227 |
T |
|
| Q |
378 |
acctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttct |
477 |
Q |
| |
|
|| || |||||| || |||||||| | || ||||| ||||||||||| ||||||||||||||||||||||| |||||||||| || |||||||| |
|
|
| T |
30425228 |
gccagccggagtgcaggttttcttatcgataattttggttcaccatgacatagaactatggggtgatgatgctaaggtgttcaatcccgagagattttca |
30425327 |
T |
|
| Q |
478 |
ggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaatggaagcaa |
577 |
Q |
| |
|
| ||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
30425328 |
gaaggtgttttaaaagcaacaaatggaagaaattcattttttccatttggagggggtcctagaatttgcattggacaaaacttttctatgttggaagcaa |
30425427 |
T |
|
| Q |
578 |
aaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatgattactcttcagccacaatatgg |
677 |
Q |
| |
|
| |||||||| || ||||||| |||| |||| || |||||||| || | ||||||||||| || || | | ||||| ||||||||||||||||| |
|
|
| T |
30425428 |
agatggcaatagcaatgattttacaacgtttcgacttcgaactttctccaagttatgctcatgccccggccacagtaattacgcttcagccacaatatgg |
30425527 |
T |
|
| Q |
678 |
cgctcatattattatacgcaaactggaa |
705 |
Q |
| |
|
|||||||| ||| |||| ||| ||||| |
|
|
| T |
30425528 |
tgctcatataattctacgtaaagtggaa |
30425555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 268 - 705
Target Start/End: Original strand, 30469217 - 30469654
Alignment:
| Q |
268 |
tttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaa |
367 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||| ||| | |||||||| |||||||||| |
|
|
| T |
30469217 |
tttttgagacaggtcaccatgattttgtatgaggttcttaggttatacccaccagtaatcgcacttgctcgaagagttcacaaagatgttaaacttggaa |
30469316 |
T |
|
| Q |
368 |
atctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctga |
467 |
Q |
| |
|
| ||| || | || || |||||| || |||||||| | || || || ||||||||||| |||||||||||||| |||||||| |||||||||| || |
|
|
| T |
30469317 |
acctagcattgccagccggagtgcaggttttcttatcgataattatggttcaccatgacatagaactatggggtgaagatgctaaggtgttcaatcccga |
30469416 |
T |
|
| Q |
468 |
aagattttctggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctcta |
567 |
Q |
| |
|
|||||||||| ||| ||| |||||||| ||||||||| ||||||||||||||||| | |||||||| |||||||||||||||| |||||||| | |
|
|
| T |
30469417 |
gagattttctgaaggtgttttaaaagcaaccaatggaagaaattcattttttccatttgcagggggtcctagaatttgcattggacagaacttttccatg |
30469516 |
T |
|
| Q |
568 |
atggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatgattactcttcagc |
667 |
Q |
| |
|
|||||||||| |||||||| || ||||||| |||| |||||||||||||||||| || | ||||| ||||| || | || | ||||| ||||||| |
|
|
| T |
30469517 |
ttggaagcaaagatggcaatagcaatgattttacaacgtttctcatttgaactttctccaagttatgcccatgccccggctacggtaattacgcttcagc |
30469616 |
T |
|
| Q |
668 |
cacaatatggcgctcatattattatacgcaaactggaa |
705 |
Q |
| |
|
|||| ||||| |||||||| ||| ||| ||||||||| |
|
|
| T |
30469617 |
cacagtatggtgctcatataattctacataaactggaa |
30469654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 278 - 705
Target Start/End: Original strand, 30431161 - 30431588
Alignment:
| Q |
278 |
aggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacact |
377 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| || | ||| | ||| |||||| || | | |||||| ||| ||||||||| |||||| | |
|
|
| T |
30431161 |
aggtcactatgattttgtacgaggttcttaggttatacccaccagaaatcgcgcttactcgaagtgatcacaaagatatgacacttggaaacctaacatt |
30431260 |
T |
|
| Q |
378 |
acctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttct |
477 |
Q |
| |
|
|||||| |||||| || |||||||| | || ||||| ||||||||||| |||||||||||||| |||||||| |||||||||| || |||||||| |
|
|
| T |
30431261 |
acctgcaggagtgcaggttttcttatcgataattttggttcaccatgacatagaactatggggtgaagatgctaaggtgttcaatcccgagagattttca |
30431360 |
T |
|
| Q |
478 |
ggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaatggaagcaa |
577 |
Q |
| |
|
| ||| ||| |||||||||||||||||| ||||||| ||||||||| | |||||||| ||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
30431361 |
gaaggtgttttaaaagcaacaaatggaagaaattcatttattccatttgaagggggtcctagaatttgaattggacaaaacttttccatgttggaagcaa |
30431460 |
T |
|
| Q |
578 |
aaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatgattactcttcagccacaatatgg |
677 |
Q |
| |
|
| |||||||| || ||||||| |||| |||||||||||||||||| || | ||||||||||| || | || | ||||| ||||||||||||||||| |
|
|
| T |
30431461 |
agatggcaatagcaatgattttacaacgtttctcatttgaactttctccatcttatgctcatgccccggctacggtaattacgcttcagccacaatatgg |
30431560 |
T |
|
| Q |
678 |
cgctcatattattatacgcaaactggaa |
705 |
Q |
| |
|
|||||||| ||| |||| ||| ||||| |
|
|
| T |
30431561 |
tgctcatataattctacgtaaagtggaa |
30431588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 264 - 645
Target Start/End: Complemental strand, 8379277 - 8378896
Alignment:
| Q |
264 |
aatctttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaactt |
363 |
Q |
| |
|
||||||||||||| || || | |||||||||||||||||||| ||||| || || || | | |||| || ||||| |||||| ||||| | || || |
|
|
| T |
8379277 |
aatctttttgtgacagctccctatgattttgtatgaggttctaaggttgtatccaccagcatttggtgttactcgatatgttggcaaagacataaagttt |
8379178 |
T |
|
| Q |
364 |
ggaaatctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatc |
463 |
Q |
| |
|
||||| | | |||||||||||||||| |||||||||||||| ||||| |||| ||| || |||||||||||||||||||| || |||||||||| |
|
|
| T |
8379177 |
ggaaacatggaagtacctgctggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatc |
8379078 |
T |
|
| Q |
464 |
ctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttc |
563 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||||||||||| ||| || || ||||||||||||| |||||||| || ||||||| |||||||||||||| |
|
|
| T |
8379077 |
ctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatattttccatttggagggggtcctagagtttgcatgggacaaaacttttc |
8378978 |
T |
|
| Q |
564 |
tctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctcca |
645 |
Q |
| |
|
||| |||||||||| |||||| || || ||||||| ||| |||||| ||||||||||| || |||||||||||| ||||| |
|
|
| T |
8378977 |
cctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaacctatgctcatactcca |
8378896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 30395001 - 30395084
Alignment:
| Q |
22 |
cacgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagta |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30395001 |
cacgtgctagggaggaagtgttacatgtctttggcaacaaaaaaccagattttgatgggctaaataacctaaagattgtaagta |
30395084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 30437262 - 30437349
Alignment:
| Q |
22 |
cacgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtattgt |
109 |
Q |
| |
|
||||||| ||||||||||| ||||| || |||||||||| ||||| |||||||||||||||| | | || ||||| ||||||||||| |
|
|
| T |
30437262 |
cacgtgcaagggaggaagtattacaagtatttggcaacaataaacccgattttgatgggctaagtcatcttaagattgtaagtattgt |
30437349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 30469075 - 30469160
Alignment:
| Q |
24 |
cgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtattgt |
109 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||||| ||||| |||||||| ||||||| | | || ||||| ||||||||||| |
|
|
| T |
30469075 |
cgtgcaagggaagaagtattacaggtctttggcaacaataaacctgattttgacgggctaagtcatcttaagattgtaagtattgt |
30469160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 8379611 - 8379527
Alignment:
| Q |
23 |
acgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtatt |
107 |
Q |
| |
|
|||||| ||||||||||| ||||| | |||||||||| ||||||||| | ||| || |||||||| || ||||| ||||||||| |
|
|
| T |
8379611 |
acgtgctagggaggaagtattacaaatatttggcaacaaaaaaccagactatgaaggactaaataaacttaagattgtaagtatt |
8379527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 30431008 - 30431092
Alignment:
| Q |
23 |
acgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtatt |
107 |
Q |
| |
|
|||||| ||||| ||||| ||||| || |||||||||| |||||||| ||||| ||||||| | | || ||||||||||||||| |
|
|
| T |
30431008 |
acgtgcaagggaagaagtattacaagtatttggcaacaataaaccagaatttgacgggctaagtcatcttaagatcgtaagtatt |
30431092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 30476037 - 30476121
Alignment:
| Q |
24 |
cgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtattg |
108 |
Q |
| |
|
||||| ||||||||||| || || ||||| ||||| | |||||||||||||||||| ||||| | || ||||| |||||||||| |
|
|
| T |
30476037 |
cgtgcaagggaggaagtattgcaagtcttcggcaataaaaaaccagattttgatggactaaaccaacttaagattgtaagtattg |
30476121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 268 - 712
Target Start/End: Complemental strand, 41627122 - 41626678
Alignment:
| Q |
268 |
tttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaa |
367 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| | || ||||| |||||| |||||| ||| | ||||| ||||| ||| ||||||||||||||| |
|
|
| T |
41627122 |
tttttgtcataggttaccatgattttgtatgaggttatgagattatatcctcccataattgagctttcgcgaaacgttgaaaaaaatgtgaaacttggaa |
41627023 |
T |
|
| Q |
368 |
atctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctga |
467 |
Q |
| |
|
| |||||| || |||||||||||||| ||||| | |||||| | ||| | |||||||| || ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41627022 |
acctaacattatctgctggagtggaggttttcatgccaattatattgttgcaccatgattgtgaattatggggtgatgatgctaaaatgttcaatcctga |
41626923 |
T |
|
| Q |
468 |
aagattttctggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctcta |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||||||| |
|
|
| T |
41626922 |
aagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattgggcaaaacttttctcta |
41626823 |
T |
|
| Q |
568 |
atggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatgattactcttcagc |
667 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || |||||||||||| ||||||| || ||||||||||||||||| || | | ||| ||||| ||| |
|
|
| T |
41626822 |
ttggaagcaaagatggcaatgacattgattttacagcatttctcatttcaactttctccagcctatgctcatgctccagccacagtaattgctcttaagc |
41626723 |
T |
|
| Q |
668 |
cacaatatggcgctcatattattatacgcaaactggaaacataaa |
712 |
Q |
| |
|
||||||| || |||||||||||| | || |||||||||||||||| |
|
|
| T |
41626722 |
cacaatacggtgctcatattattcttcgtaaactggaaacataaa |
41626678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 41627832 - 41627756
Alignment:
| Q |
30 |
agggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtat |
106 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||| |||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
41627832 |
agggaggaagtattacaaatctttggcaacaaaaaacctaattttgatgggctaaataacttgaagattgtaagtat |
41627756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 433 - 623
Target Start/End: Complemental strand, 15865722 - 15865532
Alignment:
| Q |
433 |
ctatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggg |
532 |
Q |
| |
|
||||||||||||||||| || |||||| |||||||| ||| ||| ||||||| | || || ||||| |||| |||||| | ||| || |||||||||| |
|
|
| T |
15865722 |
ctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcaaaggctacaaaaggaaaagtttcttatttcccttttggatggg |
15865623 |
T |
|
| Q |
533 |
gtcctcgaatttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttc |
623 |
Q |
| |
|
||||| ||||||| |||||||||||||| | || | |||||||| || ||||| ||||| | |||| |||||||||| |||||||| |
|
|
| T |
15865622 |
gtcctagaatttgtcttggacaaaactttgccttactagaagcaaagatagcaatttcattgctgctgcagaatttctcattcgaactttc |
15865532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 433 - 561
Target Start/End: Complemental strand, 15858654 - 15858526
Alignment:
| Q |
433 |
ctatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggg |
532 |
Q |
| |
|
||||||||||||||||| || |||||| |||||||| ||| ||| ||||||| | || |||||||| ||| |||||| | ||| || |||||||||| |
|
|
| T |
15858654 |
ctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttggatggg |
15858555 |
T |
|
| Q |
533 |
gtcctcgaatttgcattggacaaaacttt |
561 |
Q |
| |
|
||||| ||||||| |||||||||||||| |
|
|
| T |
15858554 |
gtcctagaatttgtcttggacaaaacttt |
15858526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 412 - 623
Target Start/End: Complemental strand, 15844540 - 15844329
Alignment:
| Q |
412 |
ttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagttt |
511 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| || |||||| || ||||| ||| ||| ||||||| | || |||||||| ||| ||||| |
|
|
| T |
15844540 |
ttgattcaccatgatcaagatctatggggggatgatgcaaaggagttcaaacccgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagttt |
15844441 |
T |
|
| Q |
512 |
cattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctc |
611 |
Q |
| |
|
| | ||| || ||||||||||||||| ||||||| |||||||||||||| | || | |||||||| || ||||| ||||| | |||| ||||||| |
|
|
| T |
15844440 |
cttatttcccctttggatggggtcctagaatttgtcttggacaaaactttaccttattagaagcaaagatagcaatatcattgttgctgcagaatttctc |
15844341 |
T |
|
| Q |
612 |
atttgaactttc |
623 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15844340 |
atttgaactttc |
15844329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 433 - 561
Target Start/End: Complemental strand, 15851754 - 15851626
Alignment:
| Q |
433 |
ctatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggg |
532 |
Q |
| |
|
||||||||||||||||| || | ||||||||||||| | ||||||| ||||||| | || || ||||| || |||||| | | | || |||||||||| |
|
|
| T |
15851754 |
ctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggccacaaaaggccaagtttcgtatatcccttttggatggg |
15851655 |
T |
|
| Q |
533 |
gtcctcgaatttgcattggacaaaacttt |
561 |
Q |
| |
|
||||| ||||||| |||||||||||||| |
|
|
| T |
15851654 |
gtcctagaatttgtcttggacaaaacttt |
15851626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 15844676 - 15844625
Alignment:
| Q |
276 |
ataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaatt |
327 |
Q |
| |
|
|||||| |||||||||||||| ||||| || |||||||||||||| |||||| |
|
|
| T |
15844676 |
ataggttaccatgattttgtacgaggtactaaggttataccctcctgtaatt |
15844625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 561
Target Start/End: Original strand, 11019459 - 11019563
Alignment:
| Q |
457 |
ttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaa |
556 |
Q |
| |
|
||||| || |||||||| |||| |||| |||| || ||||||||||| | |||||| | || || |||||||||||||| || |||| |||||||||| |
|
|
| T |
11019459 |
ttcaaaccagaaagattctctgaaggagtttcaaaggcaacaaatggcaaagtttcttacttgccttttggatggggtccaagactttgtattggacaaa |
11019558 |
T |
|
| Q |
557 |
acttt |
561 |
Q |
| |
|
||||| |
|
|
| T |
11019559 |
acttt |
11019563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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