View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_high_31 (Length: 365)

Name: NF8061_high_31
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_high_31
NF8061_high_31
[»] chr8 (5 HSPs)
chr8 (125-303)||(14958005-14958183)
chr8 (231-292)||(9293232-9293293)
chr8 (195-303)||(15292549-15292656)
chr8 (195-303)||(15472918-15473025)
chr8 (88-159)||(4490289-4490358)
[»] chr6 (5 HSPs)
chr6 (137-303)||(33908569-33908728)
chr6 (110-303)||(1415485-1415678)
chr6 (110-303)||(9627132-9627307)
chr6 (212-303)||(12155384-12155473)
chr6 (119-183)||(12155952-12156016)
[»] chr5 (3 HSPs)
chr5 (112-293)||(7237068-7237249)
chr5 (125-302)||(41715034-41715209)
chr5 (193-303)||(38755682-38755789)
[»] chr2 (3 HSPs)
chr2 (110-300)||(38288434-38288620)
chr2 (110-301)||(31395150-31395335)
chr2 (146-285)||(13486134-13486272)
[»] chr4 (1 HSPs)
chr4 (122-303)||(865235-865414)
[»] chr1 (7 HSPs)
chr1 (238-300)||(28666876-28666938)
chr1 (122-290)||(6397661-6397826)
chr1 (91-303)||(7440792-7441000)
chr1 (91-159)||(41941065-41941131)
chr1 (88-159)||(37259020-37259089)
chr1 (111-159)||(42517114-42517162)
chr1 (268-304)||(41941221-41941257)
[»] chr3 (5 HSPs)
chr3 (205-303)||(8543100-8543200)
chr3 (195-300)||(11630080-11630186)
chr3 (118-257)||(43361591-43361730)
chr3 (218-291)||(8541441-8541515)
chr3 (110-152)||(8540994-8541036)
[»] scaffold0035 (1 HSPs)
scaffold0035 (120-298)||(24397-24574)
[»] chr7 (2 HSPs)
chr7 (263-299)||(15077104-15077140)
chr7 (115-153)||(43814455-43814493)
[»] scaffold0154 (1 HSPs)
scaffold0154 (118-173)||(19338-19391)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 125 - 303
Target Start/End: Original strand, 14958005 - 14958183
Alignment:
Q  125 tatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattggtcg 224  Q
    |||||||||||||||||| ||||||||| |||||||| |||||| |||||||||| |||  ||||  ||||||| | ||||||||| |||||||||| ||    
T  14958005 tatatatattgcttgtaacactgaaaccctaattcttctcacagtaatagaaacataactatagctgctctataatcgcagaggtaggcacaattggccg 14958104  T
Q  225 aactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgtt 303  Q
    |||| |||||| ||||||| | ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||    
T  14958105 aactgtgttaacaaatatcctatgttcattgtcttcctctttcgttctcttgtttaatcttttgttactagttgttgtt 14958183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 9293293 - 9293232
Alignment:
Q  231 gttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttac 292  Q
    ||||| |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  9293293 gttaacaaatattgtgtgttcattgtctttctcttttgttctcttatttaatcttttgttac 9293232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 15292656 - 15292549
Alignment:
Q  195 tatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttacta 294  Q
    |||||| | |||| || |||||||||||||||||  ||||| || |||||||||||||||  | ||  ||||||||||||||||||||||| | ||||      
T  15292656 tatagtcgtagagataggcacaattggtcgaactgcgttaacaa-tatcgtgtgttcattaacttttactttcgttctcttatttaatcttctcttaccg 15292558  T
Q  295 gttgttgtt 303  Q
    |||||||||    
T  15292557 gttgttgtt 15292549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 15473025 - 15472918
Alignment:
Q  195 tatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttacta 294  Q
    |||||| | |||| || |||||||||||||||||  ||||| || |||||||||||||||  | ||  ||||||||||||||||||||||| | ||||      
T  15473025 tatagtcgtagagataggcacaattggtcgaactgcgttaacaa-tatcgtgtgttcattaacttttactttcgttctcttatttaatcttctcttaccg 15472927  T
Q  295 gttgttgtt 303  Q
    |||||||||    
T  15472926 gttgttgtt 15472918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 4490289 - 4490358
Alignment:
Q  88 ggataatattgtaaactgaatcgaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 159  Q
    ||||| ||||||||||||||||  ||  | ||| ||||||||||||||| || || ||||||||||||||||    
T  4490289 ggatattattgtaaactgaatc--ataattgtattactatatatattgcatgcaacactgaaaccttaattc 4490358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 33908728 - 33908569
Alignment:
Q  137 ttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattggtcgaactatgttaat 236  Q
    |||||| ||||||||| |||||| |||||||| ||||||||| ||||  ||||  ||||||||       |||| |||||||||||||||||  |||||     
T  33908728 ttgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagctctatag-------ggtaggcacaattggtcgaactgcgttaac 33908636  T
Q  237 aaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgtt 303  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||    
T  33908635 aaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgtt 33908569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 303
Target Start/End: Original strand, 1415485 - 1415678
Alignment:
Q  110 gaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggt 209  Q
    ||||| |||||||||||||||||   ||||||| | ||||||| ||||||||||||||  ||||||||||||||  ||||  ||||||| | | ||||||    
T  1415485 gaatcatagtagtactatatatacaacttgtaacattgaaaccctaattcttatcacaataatagaaacagaactatagctgctctataatcgtagaggt 1415584  T
Q  210 aagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtc-attctctttcgttctcttatttaatcttttgttactagttgttgtt 303  Q
    |  ||||||||| ||||||  ||||| || |||||||| || ||||||  |||||||||||||||||| |||||||||||||| ||||| |||||    
T  1415585 agccacaattggccgaactgcgttaacaagtatcgtgtatttattgtcttttctctttcgttctctta-ttaatcttttgttattagtttttgtt 1415678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 303
Target Start/End: Complemental strand, 9627307 - 9627132
Alignment:
Q  110 gaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggt 209  Q
    ||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||  |||||||||||||           ||||| |||     |    
T  9627307 gaatcgtagtagtactatatat--tgcttgtaacactgaaaccctaattcttatcacagtgatagaaacagaac-----------tatagctgc-----t 9627226  T
Q  210 aagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgtt 303  Q
    |  |||||||||  |||||  ||||| ||||||| ||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||    
T  9627225 agacacaattggctgaactgggttaacaaatatcatgtgttcattgtgtttctctttcattctcttatttaatcttttgtttctagttgttgtt 9627132  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 303
Target Start/End: Complemental strand, 12155473 - 12155384
Alignment:
Q  212 gcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgtt 303  Q
    |||||||| | |||||| |||||| |||||| |||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||||||    
T  12155473 gcacaatttgccgaactgtgttaaaaaatattgtgtgttcattgtctttctctttcgttctctta--taattttttgttactagttgttgtt 12155384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 12156016 - 12155952
Alignment:
Q  119 tagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaac 183  Q
    ||||||||||||||  | |||||| ||||||| | ||||||||||||||| ||||||||| ||||    
T  12156016 tagtactatatatacagtttgtaacactgaaatcctaattcttatcacagtaatagaaacggaac 12155952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 293
Target Start/End: Complemental strand, 7237249 - 7237068
Alignment:
Q  112 atcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaa 211  Q
    ||||||||||||||||||| |   ||||||| || |||||| ||||||||||||||| |||| |||  |||   ||||  ||||||||  |||||||||     
T  7237249 atcgtagtagtactatatacacaacttgtaacaccgaaaccctaattcttatcacagtaataaaaatggaattatagctgctctatagccgcagaggtag 7237150  T
Q  212 gcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttact 293  Q
     || |||||| ||||||  | ||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  7237149 acaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgttact 7237068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 125 - 302
Target Start/End: Original strand, 41715034 - 41715209
Alignment:
Q  125 tatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattggtcg 224  Q
    |||||||||||||||||| |||||| || || |||| ||||||| ||||||||| ||||  |||   |||||| || | ||||||| |||||||||  ||    
T  41715034 tatatatattgcttgtaacactgaaccccta-ttctcatcacagtaatagaaacggaactatagatgctctatcgtcgtagaggtaggcacaattgtccg 41715132  T
Q  225 aactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgt 302  Q
    ||||   |||| ||  ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41715133 aactgcattaacaag-atcgtatgttaattgtctttctctttcgttctcttatttaatcttttgttactagttgttgt 41715209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 303
Target Start/End: Original strand, 38755682 - 38755789
Alignment:
Q  193 tctatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttac 292  Q
    |||||| | ||||||||| |||||||||  | |||| | |||| |||||| ||||||||||   | ||||||||||||||||||||||||||||||||||    
T  38755682 tctataatcgcagaggtaggcacaattgaccaaactgtattaacaaatatggtgtgttcat---ctttctctttcgttctcttatttaatcttttgttac 38755778  T
Q  293 tagttgttgtt 303  Q
    |||||||||||    
T  38755779 tagttgttgtt 38755789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 110 - 300
Target Start/End: Complemental strand, 38288620 - 38288434
Alignment:
Q  110 gaatcgtagtagtactatatatat--tgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagag 207  Q
    |||||||||||||| |||||||||  ||||| ||| | ||||||| ||||||| |||| ||||||||||||| |||  ||    ||||||||| |||       
T  38288620 gaatcgtagtagtattatatatatattgcttataacattgaaaccctaattctcatcatagaaatagaaacataactataaatgctctatagtcgca--- 38288524  T
Q  208 gtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgtt 300  Q
       |  |||||||| ||||||| ||||| ||||||| |||||| |||||| |||||||||  |||||||||||||||||||||||||||||||    
T  38288523 ---attacaattggccgaactacgttaacaaatatcatgtgttaattgtctttctctttcaatctcttatttaatcttttgttactagttgtt 38288434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 301
Target Start/End: Complemental strand, 31395335 - 31395150
Alignment:
Q  110 gaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggt 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||    ||| ||| |||| |||| |||   ||||  || |||||   || || |    
T  31395335 gaatcgtagtagtactatatatattgcttgtaacactgaaaccctaatc---atcgcagtaatataaacggaattatagctgctttatagc--catagat 31395241  T
Q  210 aagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttg 301  Q
    |||||| ||||| ||| || |||||| ||||||| ||||||||||||| ||  |||||||| |||||||| || ||||||||||||||||||    
T  31395240 aagcaccattggacgagctgtgttaacaaatatcatgtgttcattgtcttttactttcgttttcttattt-atattttgttactagttgttg 31395150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 285
Target Start/End: Complemental strand, 13486272 - 13486134
Alignment:
Q  146 tgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgt 245  Q
    ||||||| |||||||| |||||| |||||||| |||||  |||    ||||||||  || ||||| | ||||||| | ||||| |||||| |||||| ||    
T  13486272 tgaaaccctaattcttgtcacagtaatagaaatagaacaatagttgatctatagtcacataggtaggtacaattgattgaactgtgttaaaaaatattgt 13486173  T
Q  246 gtgttcattgtcattctctttcgttctcttatttaatctt 285  Q
     ||||||||||  || ||||||||||||||||||||||||    
T  13486172 atgttcattgttttt-tctttcgttctcttatttaatctt 13486134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 303
Target Start/End: Complemental strand, 865414 - 865235
Alignment:
Q  122 tactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattgg 221  Q
    |||||||||||||| | |||| | ||||||  |||||  |||||||  ||||||||| |||   |||| |||||||||| | |||| ||| ||||||||     
T  865414 tactatatatattgttcgtaatattgaaactctaatt--tatcacaacaatagaaacggaattatagctactctatagtcgtagagataaacacaattga 865317  T
Q  222 tcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgtt 303  Q
    |||||| | ||||| ||||||||||| |||||| || ||  |||||||||||||||||||| ||||||||||  ||||||||    
T  865316 tcgaaccacgttaacaaatatcgtgttttcattttcttttactttcgttctcttatttaattttttgttactgattgttgtt 865235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 28666876 - 28666938
Alignment:
Q  238 aatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgtt 300  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28666876 aatatcgtgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttgtt 28666938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 6397826 - 6397661
Alignment:
Q  122 tactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattgg 221  Q
    ||||||||||||||||||||| |||||||||||| |||  ||||||| |||||||||| |||  ||||  |||||||||  |||||||| |||||| |||    
T  6397826 tactatatatattgcttgtaacactgaaaccttagttc--atcacagtaatagaaacaaaactatagctgctctatagtcacagaggtaggcacaa-tgg 6397730  T
Q  222 tcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgtt 290  Q
     |||| |  ||||| |||||| || ||||| ||||  ||  |||| |||||||||||||||||| ||||    
T  6397729 ccgaagtgcgttaacaaatattgtatgttcgttgtgttttactttggttctcttatttaatcttatgtt 6397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 91 - 303
Target Start/End: Original strand, 7440792 - 7441000
Alignment:
Q  91 taatattgtaaactgaatcgaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagcc 190  Q
    ||||||||| |||||||||  || |||||| || ||||||||||| |||||| || |||||  ||||||  ||||||  |||| ||||| |||  || ||    
T  7440792 taatattgttaactgaatc--atagtagtaatattatatatattgtttgtaacaccgaaactctaattc--atcacaataataaaaacaaaactataacc 7440887  T
Q  191 actctatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgtt 290  Q
     ||||||||| ||||| ||||  | |||||| ||||||  ||||| ||||||||| | |  |||||  ||  ||||||||||||||||||||||| ||||    
T  7440888 gctctatagtcgcagaagtaaatataattggccgaactgcgttaacaaatatcgtatatatattgttttttactttcgttctcttatttaatcttatgtt 7440987  T
Q  291 actagttgttgtt 303  Q
    ||||| |||||||    
T  7440988 actagatgttgtt 7441000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 41941065 - 41941131
Alignment:
Q  91 taatattgtaaactgaatcgaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 159  Q
    ||||||||||||||||||||  | ||||||||| |||||||||| ||||||| | ||||||| ||||||    
T  41941065 taatattgtaaactgaatcg--tagtagtagtagtatatatattacttgtaacattgaaaccctaattc 41941131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 37259020 - 37259089
Alignment:
Q  88 ggataatattgtaaactgaatcgaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 159  Q
    |||||||||||||| |||||||  || ||||| ||||||||||| ||| | |||||| ||||||||||||||    
T  37259020 ggataatattgtaagctgaatc--atagtagtggtactatatatgttgttggtaaaattgaaaccttaattc 37259089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 42517114 - 42517162
Alignment:
Q  111 aatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 159  Q
    ||||||||||||||||||||||||| |||||| || |||||| ||||||    
T  42517114 aatcgtagtagtactatatatattgtttgtaacaccgaaaccctaattc 42517162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 41941221 - 41941257
Alignment:
Q  268 gttctcttatttaatcttttgttactagttgttgttt 304  Q
    |||||||||||||||||| |||||||||| |||||||    
T  41941221 gttctcttatttaatcttctgttactagtcgttgttt 41941257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 8543100 - 8543200
Alignment:
Q  205 gaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctct-ttcgttctcttatttaatcttttgttacta-gttgttgt 302  Q
    |||||| |||||||||| ||||||  ||||| ||||||||| ||||||||||| |||| | ||||||||||||||||||||||||||| || ||||||||    
T  8543100 gaggtaggcacaattggccgaactgcgttaacaaatatcgtatgttcattgtctttctttcttcgttctcttatttaatcttttgttaatatgttgttgt 8543199  T
Q  303 t 303  Q
    |    
T  8543200 t 8543200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 11630080 - 11630186
Alignment:
Q  195 tatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatc-ttttgttact 293  Q
    |||||| | ||| ||| |||||||||| | |||| |||||| ||||||||| || |||||||| || ||||| |||||||||||||||| ||||||||||    
T  11630080 tatagtcgtagatgtatgcacaattggccaaactgtgttaacaaatatcgtatgatcattgtctttttcttttgttctcttatttaatctttttgttact 11630179  T
Q  294 agttgtt 300  Q
    |||||||    
T  11630180 agttgtt 11630186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 257
Target Start/End: Original strand, 43361591 - 43361730
Alignment:
Q  118 gtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaa 217  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| ||||||  |||| ||||  |||   | |  || ||||||||||||||||   |  |    
T  43361591 gtagtactatatatattgcatgtaatactgaaaccttaattctcatcacattaatacaaacgaaactaaaactgctgtatagttgcagaggtagatatca 43361690  T
Q  218 ttggtcgaactatgttaataaatatcgtgtgttcattgtc 257  Q
    |||| | ||||| ||||| ||||||| |||||||||||||    
T  43361691 ttggccaaactacgttaacaaatatcatgtgttcattgtc 43361730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 8541441 - 8541515
Alignment:
Q  218 ttggtcgaactatgttaataaatatcgtgtgttcattgtcattctct-ttcgttctcttatttaatcttttgtta 291  Q
    |||| ||||||  ||||| ||||||||||||| | ||||| |||||| |||||||||||||||||||||||||||    
T  8541441 ttggccgaactgcgttaacaaatatcgtgtgtgcgttgtctttctctcttcgttctcttatttaatcttttgtta 8541515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 8540994 - 8541036
Alignment:
Q  110 gaatcgtagtagtactatatatattgcttgtaaaactgaaacc 152  Q
    |||||||||||||||||||||||  ||||||||||| ||||||    
T  8540994 gaatcgtagtagtactatatatacagcttgtaaaacagaaacc 8541036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 120 - 298
Target Start/End: Original strand, 24397 - 24574
Alignment:
Q  120 agtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaatt 219  Q
    ||||||||| ||||||||||||| || |||||  ||| ||||||||| | ||||||||| ||||   |||  ||||||||| ||||||||| ||| ||||    
T  24397 agtactatagatattgcttgtaacaccgaaactctaagtcttatcactgtaatagaaacggaactacagctgctctatagtcgcagaggtaggcataatt 24496  T
Q  220 ggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttg 298  Q
    || |||| ||  || |  || ||||||| ||||||||| ||  |||| |||||||||||||||||| |||||| |||||    
T  24497 ggccgaa-taactttaacaagatcgtgttttcattgtcttttacttttgttctcttatttaatcttctgttaccagttg 24574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 15077140 - 15077104
Alignment:
Q  263 ctttcgttctcttatttaatcttttgttactagttgt 299  Q
    |||||||||||||||||||||| ||||||||||||||    
T  15077140 ctttcgttctcttatttaatctgttgttactagttgt 15077104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 43814493 - 43814455
Alignment:
Q  115 gtagtagtactatatatattgcttgtaaaactgaaacct 153  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  43814493 gtagtagtgctatatatattgcttgtaacactgaaacct 43814455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 19338 - 19391
Alignment:
Q  118 gtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaata 173  Q
    |||||||||||||||||| |||||| | ||||||| ||||||  ||||||||||||    
T  19338 gtagtactatatatattgtttgtaacagtgaaaccctaattc--atcacagaaata 19391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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