View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_33 (Length: 359)
Name: NF8061_high_33
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 25488162 - 25487828
Alignment:
| Q |
17 |
aaaacctacacacttttggaactttttataattcttcagaactcactttgtatatctataagcaaaaccaattatccatgacaactccttttcaataact |
116 |
Q |
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| T |
25488162 |
aaaacctacacacttttggaactttttataattcttcagaactcactttgtatatctataagcaaaaccaattatccatgacaactccttttcaataact |
25488063 |
T |
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| Q |
117 |
tgttagatcctaaacttgagatcaaattatatggtacagaatcaccatctccttgaaaaaggataaaagcgattatccaatataacacaccttccaactt |
216 |
Q |
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| T |
25488062 |
tgttagatcctaaacttgagatcaaattatatggtacagaatcaccatctccttgaaaaaggataaaaccgattatccaatataacacaccttccaactt |
25487963 |
T |
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| Q |
217 |
aaattatatcaacccacccatccttatattgagcatcctaatgcccttcgtaacatgtctagactgttaatgaattttaatagatcctcactcaaaccgg |
316 |
Q |
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| T |
25487962 |
aaattatatcaacccacccatccttatattgagcatcctaatgcccttcgtaacatgtctagactgttaatgaattttaatagatcctcactcaaaccgg |
25487863 |
T |
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| Q |
317 |
aatagcttcttgttgacggaaaacatttctctgct |
351 |
Q |
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| T |
25487862 |
aatagcttcttgttgacggaaaacatttctctgct |
25487828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 16103110 - 16103016
Alignment:
| Q |
41 |
tttataattcttcagaactcactttgtatatctataagcaaaaccaattatccatgacaactccttttcaataacttgttagatcctaaacttgag |
136 |
Q |
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| T |
16103110 |
tttataattcttccttactcacttc-tatatccttaatcaagaccaattatccttgacaacgtcttttcaataacttgttagatcctaaatttgag |
16103016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 14656390 - 14656316
Alignment:
| Q |
59 |
tcactttgtatatctataagcaaaaccaattatccatgacaactccttttcaataacttgttagatcctaaactt |
133 |
Q |
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||||||| ||||| |||| ||||||||||||| | ||||||| |||| |||| |||||||||||||||||||| |
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| T |
14656390 |
tcacttttaatatccataatcaaaaccaattattcttgacaacctctttgcaatgacttgttagatcctaaactt |
14656316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 27005001 - 27004931
Alignment:
| Q |
83 |
accaattatccatgacaactccttttcaataacttgttagatcctaaacttgagatcaaattatatggtac |
153 |
Q |
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| T |
27005001 |
accaattatccttgacaatgtctcttcaataacttgttagatcctaaacttgaggttagataatatggtac |
27004931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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