View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_high_35 (Length: 355)

Name: NF8061_high_35
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_high_35
NF8061_high_35
[»] chr5 (3 HSPs)
chr5 (28-212)||(671192-671379)
chr5 (263-340)||(669353-669430)
chr5 (28-79)||(8123394-8123445)
[»] chr3 (2 HSPs)
chr3 (28-79)||(55211917-55211968)
chr3 (28-80)||(14029172-14029224)
[»] chr6 (2 HSPs)
chr6 (25-79)||(13886454-13886508)
chr6 (28-79)||(33242716-33242766)
[»] chr7 (1 HSPs)
chr7 (28-79)||(42513295-42513346)
[»] chr1 (2 HSPs)
chr1 (28-79)||(13087573-13087624)
chr1 (28-84)||(21076208-21076264)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 671379 - 671192
Alignment:
Q  28 tagaactagccgagtcactatattagtgctccttattctaaatatcctatcaatttccccttggttttaccaaatgtgt--agcttatcccctcacgtta 125  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| |||    
T  671379 tagaattagccgagtcactatattaatgctccttattctaaatatcctatcagtttccccttggttttaccaaatgtgtaaagcttatcccctcacatta 671280  T
Q  126 atttgaaagagagataaatgtataagtgagagta-ttttttcggttacatttaatgggagtataaatgtataactaaagaagaatgga 212  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||| ||||||||||||||||||||||||||||||    
T  671279 atttgaaagagagataaatgtataagtgagagtatttttttgggttacattgagtggaagtataaatgtataactaaagaagaatgga 671192  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 669430 - 669353
Alignment:
Q  263 gcatccgtgaaaattcgtacgcacaagtcctgtactgtttagcacttaaaacttctttagaaaaacacaaatacaata 340  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  669430 gcattcgtgaaaattcgtacgcacaagtcccgtactgtttagcacttaaaacttctctagaaaaacacaaatacaata 669353  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 8123445 - 8123394
Alignment:
Q  28 tagaactagccgagtcactatattagtgctccttattctaaatatcctatca 79  Q
    |||||||||  ||||||| | |||||||||||||||||||||||||||||||    
T  8123445 tagaactagatgagtcaccagattagtgctccttattctaaatatcctatca 8123394  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 55211917 - 55211968
Alignment:
Q  28 tagaactagccgagtcactatattagtgctccttattctaaatatcctatca 79  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||||||    
T  55211917 tagaactagccgagtcgccacattagtgctccttattctaaatatcctatca 55211968  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 14029224 - 14029172
Alignment:
Q  28 tagaactagccgagtcactatattagtgctccttattctaaatatcctatcaa 80  Q
    ||||||||||||||||||   ||| ||||| ||||||||||||||| ||||||    
T  14029224 tagaactagccgagtcaccgcatttgtgcttcttattctaaatatcttatcaa 14029172  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 13886508 - 13886454
Alignment:
Q  25 ttatagaactagccgagtcactatattagtgctccttattctaaatatcctatca 79  Q
    ||||||||||||| ||||||| | |||||||||||||||||||| ||||||||||    
T  13886508 ttatagaactagcagagtcaccacattagtgctccttattctaactatcctatca 13886454  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 33242766 - 33242716
Alignment:
Q  28 tagaactagccgagtcactatattagtgctccttattctaaatatcctatca 79  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  33242766 tagaactagctgagtcaccatattagtgctccttattct-aatatcctatca 33242716  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 42513295 - 42513346
Alignment:
Q  28 tagaactagccgagtcactatattagtgctccttattctaaatatcctatca 79  Q
    |||||||||  ||||||| | |||||||||||||||||||||||||||||||    
T  42513295 tagaactagatgagtcaccacattagtgctccttattctaaatatcctatca 42513346  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 13087624 - 13087573
Alignment:
Q  28 tagaactagccgagtcactatattagtgctccttattctaaatatcctatca 79  Q
    |||||||||||||||||| | |||| ||||||||||||| ||||||||||||    
T  13087624 tagaactagccgagtcaccacattaatgctccttattctgaatatcctatca 13087573  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 21076208 - 21076264
Alignment:
Q  28 tagaactagccgagtcactatattagtgctccttattctaaatatcctatcaatttc 84  Q
    |||||||||  ||||||| | |||||| |||||||||||||  ||||||||||||||    
T  21076208 tagaactaggtgagtcaccacattagtactccttattctaaccatcctatcaatttc 21076264  T

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