View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_37 (Length: 340)
Name: NF8061_high_37
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 2875616 - 2875928
Alignment:
| Q |
18 |
gaagaatttggtgtagagcctgcttcctaataagagtatgtttgttttcacattggaagcctttgatgaagaatatatgaatttctatacaacaggcagg |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2875616 |
gaagaatttggtgaagagcctgcttcctaataagagtatgtttgttttcacattggaagcctttgatgaagaatatatgaatttctatacaacaggcagg |
2875715 |
T |
|
| Q |
118 |
gttaggttatgctagatcacaattgataagcagcttattgtgctagtttctcagacaaaaaatcttattgcaaatgaatcagtgttgttgtaagagataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2875716 |
gttaggttatgctagatcacaattgataagcagcttattgtgctagtttctcagacaaaaaatcttattgcaaatgaatcagtgttgttgtaagagataa |
2875815 |
T |
|
| Q |
218 |
aagtcactatactatcttggcattcttttaatcattacaactgtgtttaacaagaaaacattgatcaattattttgatgcatagtttgaagttatttgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2875816 |
aagtcactatactatcttggcattcttttaatcattacaactgtgtttaacaagaaaacattgatcaattattttgatgcatagtttgaagttatttgtt |
2875915 |
T |
|
| Q |
318 |
ggctctgtctctg |
330 |
Q |
| |
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||||||||||||| |
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| T |
2875916 |
ggctctgtctctg |
2875928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 2846191 - 2846294
Alignment:
| Q |
18 |
gaagaatttggtgtagagcctgcttcctaataagagtatgtttgttttcacattggaagcctttgatgaagaatatatgaatttctatacaacaggcagg |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
2846191 |
gaagaatttggtgaagagcctgcttcctaataagagtacgtttgttttcgcattggaagcctttgatgaataatatatgaatttctatacaacagggagg |
2846290 |
T |
|
| Q |
118 |
gtta |
121 |
Q |
| |
|
|||| |
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|
| T |
2846291 |
gtta |
2846294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 2858012 - 2858115
Alignment:
| Q |
18 |
gaagaatttggtgtagagcctgcttcctaataagagtatgtttgttttcacattggaagcctttgatgaagaatatatgaatttctatacaacaggcagg |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
2858012 |
gaagaatttggtgaagagcctgcttcctaataagagtacgtttgttttcgcattggaagcctttgatgaataatatatgaatttctatacaacagggagg |
2858111 |
T |
|
| Q |
118 |
gtta |
121 |
Q |
| |
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|||| |
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| T |
2858112 |
gtta |
2858115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 2858325 - 2858393
Alignment:
| Q |
207 |
gtaagagataaaagtcactatactatcttggcattcttttaatcattacaactgtgtttaacaagaaaa |
275 |
Q |
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||||||||||||| ||||| | ||||||| |||||||||||| ||||||| |||||||||| |||||| |
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| T |
2858325 |
gtaagagataaaattcactgttctatcttaccattcttttaattattacaattgtgtttaactagaaaa |
2858393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 2847011 - 2847046
Alignment:
| Q |
287 |
tattttgatgcatagtttgaagttatttgttggctc |
322 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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| T |
2847011 |
tattttgatgcatagtttgaagttaattgttggctc |
2847046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 2858848 - 2858883
Alignment:
| Q |
287 |
tattttgatgcatagtttgaagttatttgttggctc |
322 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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| T |
2858848 |
tattttgatgcatagtttgaagttaattgttggctc |
2858883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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