View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_high_4 (Length: 747)

Name: NF8061_high_4
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_high_4
NF8061_high_4
[»] chr4 (13 HSPs)
chr4 (1-735)||(33750057-33750797)
chr4 (166-374)||(33718945-33719153)
chr4 (168-374)||(33735618-33735824)
chr4 (167-362)||(33720976-33721171)
chr4 (1-115)||(33735871-33735985)
chr4 (530-619)||(33720746-33720835)
chr4 (530-641)||(33718672-33718783)
chr4 (12-113)||(33719203-33719304)
chr4 (530-615)||(33735359-33735444)
chr4 (402-469)||(33718850-33718917)
chr4 (393-459)||(33720864-33720930)
chr4 (1-100)||(33721214-33721319)
chr4 (393-446)||(33735540-33735593)
[»] chr7 (2 HSPs)
chr7 (304-356)||(6583050-6583102)
chr7 (304-356)||(6568891-6568943)
[»] chr6 (1 HSPs)
chr6 (313-359)||(13409875-13409921)
[»] chr1 (1 HSPs)
chr1 (310-368)||(44331866-44331925)


Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 735
Target Start/End: Complemental strand, 33750797 - 33750057
Alignment:
Q  1 aacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaatttctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  33750797 aacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatccaatatttgtctcactttgcatttctt 33750698  T
Q  101 gattcatattctcgttctcattctcat------cttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaaccattggaaa 194  Q
    |||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750697 gattcatattctcgttctcattctcattctcatcttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaaccattggaaa 33750598  T
Q  195 attgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750597 attgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtg 33750498  T
Q  295 gcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttcttcttagctctcnnnnnnnnnnnnnnnnnct 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||    
T  33750497 gcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttcttcttagctctcttttgtttttgttttttct 33750398  T
Q  395 cttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttccatgttcgcaggtggaacaattctttctaannnnnnnnnnnn 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                
T  33750397 cttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttctatgttcgcaggtggaacaattctttctaagctgctgctgct 33750298  T
Q  495 nnnnnntccgatggcgggatttgggaggtgaaattcggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcg 594  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750297 gctgcttccgatggcgggatttgggaggtgaaattcggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcg 33750198  T
Q  595 gaagtgagtgtggtgggggagaaggaagaagaggagtagttcatgttcatgtttgggaagtggcaggttgtttgtgttggagtttggaatgtttaaggtt 694  Q
    || |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750197 gaggtgagtgtagtggcggagaaggaagaagaggagtagttcatgttcatgtttgggaagtggcaggttgtttgtgttggagtttggaatgtttaaggtt 33750098  T
Q  695 tagaagatttgatgtttttggaaagtcagagggtggaaatg 735  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33750097 tagaagatttgatgtttttggaaagtcagagggtggaaatg 33750057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 166 - 374
Target Start/End: Complemental strand, 33719153 - 33718945
Alignment:
Q  166 tgcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccg 265  Q
    |||||||| || |||||||| | |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  33719153 tgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagctctggcagcttcctccgccg 33719054  T
Q  266 tggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttctt 365  Q
    ||| ||| |||||||||||||||||    |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  33719053 tggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgtctcactcctctatacttctt 33718954  T
Q  366 cttagctct 374  Q
     ||||||||    
T  33718953 tttagctct 33718945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 168 - 374
Target Start/End: Complemental strand, 33735824 - 33735618
Alignment:
Q  168 cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtg 267  Q
    |||||| || |||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  33735824 cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg 33735725  T
Q  268 gaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttcttct 367  Q
    | ||| ||||| ||||||||||||   |||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||||||||||||||||||    
T  33735724 gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctctgtacttcttct 33735625  T
Q  368 tagctct 374  Q
    |||||||    
T  33735624 tagctct 33735618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 167 - 362
Target Start/End: Complemental strand, 33721171 - 33720976
Alignment:
Q  167 gcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgt 266  Q
    ||||||| || |||||||| | ||||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||    
T  33721171 gcttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgt 33721072  T
Q  267 ggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtactt 362  Q
    || ||| ||||| |||||||||||    |||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||    
T  33721071 ggtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcctctgtactt 33720976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 33735985 - 33735871
Alignment:
Q  1 aacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaatttctt 100  Q
    |||||||| |||||||||||||||| ||| || |  ||||||||||||||||||| | ||||| || ||||||||||| |||||||| |||| |||||||    
T  33735985 aacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcccatagttgtctcaatttgtatttctt 33735886  T
Q  101 gattcatattctcgt 115  Q
    |||||||||||||||    
T  33735885 gattcatattctcgt 33735871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 530 - 619
Target Start/End: Complemental strand, 33720835 - 33720746
Alignment:
Q  530 cggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggagaagg 619  Q
    ||||||||||||| |||||||| || ||||||| ||||| ||||||||| ||||||||||||||||| ||||| ||||| | ||||||||    
T  33720835 cggtggaggtggaaccggagactacgttggttagggcagcgacgatgactgagagttcttgatcggaggtgagggtggtagtggagaagg 33720746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 530 - 641
Target Start/End: Complemental strand, 33718783 - 33718672
Alignment:
Q  530 cggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggagaaggaagaagagga 629  Q
    |||| |||||||||||||||||||| ||||||| ||| | ||| ||||| ||  ||||||||||||| | ||| |||| || ||||||||| ||||||||    
T  33718783 cggttgaggtggagccggagacgactttggttagggcggtgacaatgacggattgttcttgatcggaggggagagtggaggaggagaaggaggaagagga 33718684  T
Q  630 gtagttcatgtt 641  Q
    || |||||||||    
T  33718683 gttgttcatgtt 33718672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 33719304 - 33719203
Alignment:
Q  12 ttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaatttcttgattcatattc 111  Q
    |||||||||||||| ||| ||||  |||||| |||||||||||||| |||||||| |||| ||| |  |||| ||| |||| ||||||||||||||||||    
T  33719304 ttgttgaaaatcaggttcaccaatgctatccaaaaaatcacaatccttattattctcaaaccccgtcattgtttcaatttgcatttcttgattcatattc 33719205  T
Q  112 tc 113  Q
    ||    
T  33719204 tc 33719203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 530 - 615
Target Start/End: Complemental strand, 33735444 - 33735359
Alignment:
Q  530 cggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggag 615  Q
    |||||||||||||||||||||| || |||||||| ||||  |||||| | ||||||||||||||||| ||||| | || |||||||    
T  33735444 cggtggaggtggagccggagactacgttggttaaagcagcaacgatggcggagagttcttgatcggaggtgagagcggcgggggag 33735359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 402 - 469
Target Start/End: Complemental strand, 33718917 - 33718850
Alignment:
Q  402 gaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttccatgttcgcaggtggaa 469  Q
    |||||||| ||||||||| |||||||| |||||||||||  ||||||||||||||||||  |||||||    
T  33718917 gaagaaattgcatcctaaacatcctgctatgttgcattcgcggcaggtttccatgttcgttggtggaa 33718850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 459
Target Start/End: Complemental strand, 33720930 - 33720864
Alignment:
Q  393 ctcttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttccatgttc 459  Q
    |||||| |||||||||| ||||||||| |||||||| |||||||||||| | |||||||| ||||||    
T  33720930 ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccgacaggtttctatgttc 33720864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 33721319 - 33721214
Alignment:
Q  1 aacctcatcagttgttgaaaatcagtttc---cccaagcctatcccaaaaatcacaatc---catattattcccaaatcccatatttgtctcactttgaa 94  Q
    |||||||| |||||||||||||||| |||   |||||  ||||||||||||||||| ||   | |||||||||||||||||||  |||||||| |||| |    
T  33721319 aacctcataagttgttgaaaatcagcttcttccccaatactatcccaaaaatcacattcagtcgtattattcccaaatcccatcgttgtctcaatttgca 33721220  T
Q  95 tttctt 100  Q
    ||||||    
T  33721219 tttctt 33721214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 33735593 - 33735540
Alignment:
Q  393 ctcttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggca 446  Q
    |||||| |||||||||| ||||||||| |||||||| |||||||||||| ||||    
T  33735593 ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccggca 33735540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 6583102 - 6583050
Alignment:
Q  304 gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct 356  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  6583102 gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct 6583050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 6568943 - 6568891
Alignment:
Q  304 gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct 356  Q
    |||||||| |||||||| |||||||| ||||||||||| ||||||||||||||    
T  6568943 gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 6568891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 13409921 - 13409875
Alignment:
Q  313 atttcagcagcccatttaccccatggtctttgtctcactcctctgta 359  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||    
T  13409921 atttctgctgcccattttccccatggtctttgtctcactcctctgta 13409875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 44331866 - 44331925
Alignment:
Q  310 cgaatttcagcagcccatttaccccatggtctttgtctcactcctctgta-cttcttctt 368  Q
    |||||||| || |||||||| ||||||||||| ||||| ||||||||||| |||||||||    
T  44331866 cgaatttctgctgcccattttccccatggtctctgtcttactcctctgtatcttcttctt 44331925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University