View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_high_40 (Length: 333)

Name: NF8061_high_40
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_high_40
NF8061_high_40
[»] chr8 (6 HSPs)
chr8 (21-311)||(479163-479453)
chr8 (21-151)||(43319121-43319252)
chr8 (25-120)||(40589810-40589905)
chr8 (22-151)||(7126170-7126300)
chr8 (269-305)||(473937-473973)
chr8 (24-107)||(8452160-8452243)
[»] chr2 (2 HSPs)
chr2 (22-147)||(39829037-39829163)
chr2 (21-151)||(87304-87435)
[»] chr1 (1 HSPs)
chr1 (25-151)||(5608268-5608395)
[»] chr5 (2 HSPs)
chr5 (21-151)||(20203907-20204038)
chr5 (21-149)||(8387030-8387159)
[»] chr4 (8 HSPs)
chr4 (21-151)||(28538893-28539024)
chr4 (21-151)||(56062949-56063080)
chr4 (22-151)||(26423272-26423402)
chr4 (21-148)||(55733960-55734088)
chr4 (22-150)||(28425143-28425272)
chr4 (21-151)||(2063719-2063850)
chr4 (21-151)||(49950270-49950401)
chr4 (45-151)||(51260659-51260766)
[»] chr7 (2 HSPs)
chr7 (21-151)||(3746196-3746324)
chr7 (21-109)||(16096329-16096417)
[»] chr6 (1 HSPs)
chr6 (24-150)||(11732757-11732884)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 479163 - 479453
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  479163 tggatcatttataacgctgacctgctgcccatgtccaattgtccacctagaaccatgtaaaagtagctgacacgaagtccaaatactccgccaagcaaag 479262  T
Q  121 tt-gggttattaccgagtttagcacccaaaaagaatgatataattgagactactaaataagttacnnnnnnnagtaatatttaaattgaacgaagaatat 219  Q
     | |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||       ||||||||||||||||||| ||||||||    
T  479263 ctcgggttattaccgagtttagcacccaaaa-gaatgatataattgagattactaaataagttactttttttagtaatatttaaattgaacaaagaatat 479361  T
Q  220 atataataaatttcttattctcttcacacagcataagcatcgtgtgtaatttggaaagcaaagatgggatgtttagacatggagtactacct 311  Q
    |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  479362 atataataaatttcttcttctcttcacacaacataagcatcgtgtataatttggaaagcaaagatgggatgtttagacatggagtactacct 479453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 43319121 - 43319252
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43319121 tggatcattcataacgctgacatgcttcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaagcaaag 43319220  T
Q  121 -ttgggttattaccgagtttagcacccaaaaa 151  Q
     | ||||||||| |||||||||||||||||||    
T  43319221 ctcgggttattatcgagtttagcacccaaaaa 43319252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 40589810 - 40589905
Alignment:
Q  25 tcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||| | ||||||||||||| ||||||| || ||||||||||||||||| |||||    
T  40589810 tcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgtaaaagtatctgacgcaaattccaaatactccgccaagcaaag 40589905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 7126300 - 7126170
Alignment:
Q  22 ggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag- 120  Q
    ||||||||||| || ||||| || |||||| ||||||| ||||| ||| | |||| ||||||||  || |||||| |||||||||| |||||| |||||     
T  7126300 ggatcattcatcacactgacatgttgcccacgtccaatcgtccatctacacccatataaaagtaaatgtcgcgaattccaaatacttcgccaagcaaagc 7126201  T
Q  121 ttgggttattaccgagtttagcacccaaaaa 151  Q
    | |||||||||||||||||||||||| ||||    
T  7126200 tcgggttattaccgagtttagcaccctaaaa 7126170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 473937 - 473973
Alignment:
Q  269 tttggaaagcaaagatgggatgtttagacatggagta 305  Q
    |||||||||||||||||||||||||||||||||||||    
T  473937 tttggaaagcaaagatgggatgtttagacatggagta 473973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 8452160 - 8452243
Alignment:
Q  24 atcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatact 107  Q
    ||||||||| || || ||||||||||||| |||||||||||||||| | | || ||| |||| ||||| |||| || |||||||    
T  8452160 atcattcatcacactaacctgctgcccatatccaattgtccacctacatcaatataatagtaactgacacgaattctaaatact 8452243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 39829037 - 39829163
Alignment:
Q  22 ggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag- 120  Q
    ||||||||||| ||||||||||| ||||||| |||||| ||||| ||| |||||| |||||||| ||||| |||| ||||||||||||||||| |||||     
T  39829037 ggatcattcatcacgctgacctgttgcccatctccaatcgtccatctacaaccatataaaagtaactgacacgaattccaaatactccgccaagcaaagc 39829136  T
Q  121 ttgggttattaccgagtttagcaccca 147  Q
    |||||||||||||||||||||||||||    
T  39829137 ttgggttattaccgagtttagcaccca 39829163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 87435 - 87304
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    |||||||||||| ||||| ||||||||||||| ||||| ||| |||||| | ||||||||||||| |||||||||| |||| |||||||||||| |||||    
T  87435 tggatcattcatcacgctaacctgctgcccatttccaactgttcacctacatccatgtaaaagtatctgacgcgaattccatatactccgccaagcaaag 87336  T
Q  121 -ttgggttattaccgagtttagcacccaaaaa 151  Q
     |   |||||||||||||||||||||||||||    
T  87335 ctcaagttattaccgagtttagcacccaaaaa 87304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 5608395 - 5608268
Alignment:
Q  25 tcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttg 123  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||| | ||||||||||||| |||||||||| |||||||||| | |||| ||||| |      
T  5608395 tcattcatcacgctgacctgctgcccatttccaactgtccacctacatccatgtaaaagtatctgacgcgaattccaaatacttctccaagcaaagctca 5608296  T
Q  124 ggttattaccgagtttagcacccaaaaa 151  Q
    |||||||||| |||||||||||||||||    
T  5608295 ggttattaccaagtttagcacccaaaaa 5608268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 20204038 - 20203907
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    |||||||||||| |||||||  |||||||||| ||||| |||||||||| | || | |||||||| |||||||||| |||||||||||| |||| |||||    
T  20204038 tggatcattcatcacgctgatttgctgcccatttccaaatgtccacctacatccgtataaaagtaactgacgcgaattccaaatactcctccaagcaaag 20203939  T
Q  121 -ttgggttattaccgagtttagcacccaaaaa 151  Q
     | ||||||| |||||||||||||||||||||    
T  20203938 atcgggttataaccgagtttagcacccaaaaa 20203907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 8387159 - 8387030
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    |||||||||||| || |||||||||||||||| ||||||||| || ||| | |||| ||||||||  ||||||||| |||||||||| | |||| |||||    
T  8387159 tggatcattcatcacactgacctgctgcccatttccaattgtgcatctacatccatataaaagtaattgacgcgaattccaaatacttctccaagcaaag 8387060  T
Q  121 tt-gggttattaccgagtttagcacccaaa 149  Q
    || |||||||  |||||||||| |||||||    
T  8387059 ttcgggttatatccgagtttaggacccaaa 8387030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 28538893 - 28539024
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||| ||| | |||| |||||||| |||| | ||| ||||||||||||||||| ||||     
T  28538893 tggatcattcatcacgctgacctgctgcccatttccaactgtccatctacatccatataaaagtaactgatgtgaattccaaatactccgccaagcaaaa 28538992  T
Q  121 tt-gggttattaccgagtttagcacccaaaaa 151  Q
    || ||||||| ||||||| |||||||||||||    
T  28538993 ttcgggttataaccgagtctagcacccaaaaa 28539024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 56063080 - 56062949
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    |||||||||||| ||||||||||||||||||| | |||||||||| ||| | |||| |||||||| |||||||||| ||||||||||||  ||| |||||    
T  56063080 tggatcattcatcacgctgacctgctgcccattttcaattgtccatctacatccatataaaagtaactgacgcgaattccaaatactccttcaagcaaag 56062981  T
Q  121 -ttgggttattaccgagtttagcacccaaaaa 151  Q
     | |||||||  ||||||||||||||||||||    
T  56062980 ctcgggttatatccgagtttagcacccaaaaa 56062949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 26423272 - 26423402
Alignment:
Q  22 ggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaac-aaag 120  Q
    ||||||||||| || ||||| || ||||||| |||||| ||||| ||| |||||| |||||||| |||||||||| ||||||||||||||||| | |||     
T  26423272 ggatcattcatcacactgacatgttgcccatctccaatcgtccatctacaaccatataaaagtaactgacgcgaattccaaatactccgccaaccaaaac 26423371  T
Q  121 ttgggttattaccgagtttagcacccaaaaa 151  Q
    ||||||||||||  |||||||||||||||||    
T  26423372 ttgggttattactaagtttagcacccaaaaa 26423402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 55734088 - 55733960
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||||||| | |||| |||||| | |||||| ||| ||||||||||||||||| ||| |    
T  55734088 tggatcattcatcacgctgacctgctgcccatttccaactgtccacctacatccatataaaagcaactgacgtgaattccaaatactccgccaagcaatg 55733989  T
Q  121 -ttgggttattaccgagtttagcacccaa 148  Q
     |  |||||| ||||||||||||||||||    
T  55733988 ctcaggttataaccgagtttagcacccaa 55733960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 28425272 - 28425143
Alignment:
Q  22 ggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag- 120  Q
    ||||||||||| | | | ||||| ||||||| |||||| ||||| ||| ||| || |||||||| |||||||||| ||||||||||||||||| |||||     
T  28425272 ggatcattcatcaagttaacctgttgcccatctccaatcgtccatctacaactatataaaagtaactgacgcgaattccaaatactccgccaagcaaagc 28425173  T
Q  121 ttgggttattaccgagtttagcacccaaaa 150  Q
    ||||| |||||||||||||||||| |||||    
T  28425172 ttgggctattaccgagtttagcactcaaaa 28425143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 2063850 - 2063719
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    ||||||||| || |||||||| |||||||||| | |||||||| ||||| | |||| ||||||||||||||| ||| ||||||||||||  ||| |||||    
T  2063850 tggatcatttatcacgctgacatgctgcccattttcaattgtctacctacatccatataaaagtagctgacgtgaattccaaatactccatcaagcaaag 2063751  T
Q  121 -ttgggttattaccgagtttagcacccaaaaa 151  Q
     | | ||||| || ||||||||||||||||||    
T  2063750 ctcgagttataactgagtttagcacccaaaaa 2063719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 49950401 - 49950270
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    |||||||||||| ||| |||| |||| ||||| |||||||||||||||| |   |||||||||||  | ||||||| ||||||||||||| ||| |||||    
T  49950401 tggatcattcatcacgttgacatgctacccatttccaattgtccacctacatttatgtaaaagtaattcacgcgaattccaaatactccgtcaagcaaag 49950302  T
Q  121 -ttgggttattaccgagtttagcacccaaaaa 151  Q
     | ||||||| ||| |||||||| ||||||||    
T  49950301 ctcgggttataacctagtttagctcccaaaaa 49950270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 51260659 - 51260766
Alignment:
Q  45 ctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggttattaccgagtttagca 143  Q
    |||||||| |||||||||||| ||| | |||| |||||||| || ||||||| |||||||||||| |||| ||||| | |||||||   |||||||||||    
T  51260659 ctgcccatttccaattgtccatctacatccatataaaagtaacttacgcgaattccaaatactcctccaagcaaagctcgggttatattcgagtttagca 51260758  T
Q  144 cccaaaaa 151  Q
    ||||||||    
T  51260759 cccaaaaa 51260766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 3746324 - 3746196
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 120  Q
    |||||||||||| |||||||| ||    ||||||||||||||||||||| ||| || |||||||| |||||||||| ||||||||||||||||| |||||    
T  3746324 tggatcattcatcacgctgacatga---ccatgtccaattgtccacctacaacaatataaaagtaactgacgcgaattccaaatactccgccaagcaaag 3746228  T
Q  121 -ttgggttattaccgagtttagcacccaaaaa 151  Q
     | ||||||| ||||||||||||||| |||||    
T  3746227 ctagggttataaccgagtttagcaccaaaaaa 3746196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 16096417 - 16096329
Alignment:
Q  21 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactcc 109  Q
    |||||| ||||| |||||||||||||  |||| |||||||||||||||| | |||| ||| |||| ||| | |||| ||||||||||||    
T  16096417 tggatctttcatcacgctgacctgctatccatttccaattgtccacctacatccatataacagtaactggcacgaattccaaatactcc 16096329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 11732757 - 11732884
Alignment:
Q  24 atcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-tt 122  Q
    ||||||||| |||| ||| |||||||||| || |||| |||||||| | |||||||||| || |||||||||| |||||||||||| |||   |||| |     
T  11732757 atcattcatcacgccgacatgctgcccatttctaattatccacctacatccatgtaaaactaactgacgcgaattccaaatactccaccaggaaaagctc 11732856  T
Q  123 gggttattaccgagtttagcacccaaaa 150  Q
    ||||||| ||||||||| ||||||||||    
T  11732857 gggttataaccgagttttgcacccaaaa 11732884  T

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