View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_46 (Length: 304)
Name: NF8061_high_46
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 24 - 275
Target Start/End: Complemental strand, 15546036 - 15545785
Alignment:
| Q |
24 |
ggatgacagggaaaaacttgtacaaaaattatgagaaaatgattaaaattaaataaatacatacccttgatatttcccctcccttcttataacatagtag |
123 |
Q |
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| T |
15546036 |
ggatgacagggaaaaacttgtacaaaaattacgagaaaatgattaaaattaaataaatacatacccttgatatttcccctcccttcttataacatagtag |
15545937 |
T |
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| Q |
124 |
cgattcgaagacaacggttgattcaatactggaatgaacatggcttcttcactgtatgtgttcatttctccagttatcatattgtctatacaagatgtat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |
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| T |
15545936 |
cgattcgaagacaacggttgattcaatactggaatgaacatggcttcttcactgtatgtgtttatttctctagttatcatattttctatacaagatgtat |
15545837 |
T |
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| Q |
224 |
aattgatggttacatctttgttctgagggataggaaaattcttgattctatg |
275 |
Q |
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| T |
15545836 |
aattgatggttacctctttgttctgagggataggaaaattcttgattctatg |
15545785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 15522444 - 15522295
Alignment:
| Q |
24 |
ggatgacagggaaaaacttgtacaaaaattatgagaaaatgattaaaattaaataaatacatacccttgatatttcccctcccttcttataacatagtag |
123 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15522444 |
ggatgacagggaaaaacttgtacaaaaattacgagaaaatgattaaaattaaataaatacatacccttgatatttcccctcccttcttataacatagtag |
15522345 |
T |
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| Q |
124 |
cgattcgaagacaacggttgattcaatactggaatgaacatggcttcttc |
173 |
Q |
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| T |
15522344 |
cgattagaagacaatggttgattcaatactggaatgaacatagcttcttc |
15522295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 71 - 274
Target Start/End: Complemental strand, 15528549 - 15528349
Alignment:
| Q |
71 |
attaaataaatacatacccttgatatttcccctcccttcttataacatagtagcgattcgaagacaacggttgattcaatactggaatgaacatggcttc |
170 |
Q |
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| T |
15528549 |
attaaataaatacatacccttgatacttccccttccttcttataacatagtagcgattcgaagacaatggttgattcaacactggaatgaacatagcttc |
15528450 |
T |
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| Q |
171 |
ttcactgtatgtgttcatttctccagttatcatattgtctatacaagatgtataattgatggttacatctttgttctgagggataggaaaattcttgatt |
270 |
Q |
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| T |
15528449 |
ttcaccgtatgtgtttgcatgtccagtt---tgactgtttacaccagatgaataattgatggttacatttttgttctgaggtagaggaaaattcttgatt |
15528353 |
T |
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| Q |
271 |
ctat |
274 |
Q |
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|||| |
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| T |
15528352 |
ctat |
15528349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 15518099 - 15518002
Alignment:
| Q |
79 |
aatacatacccttgatatttcccctcccttcttataacatagtagcgattcgaagacaacggttgattcaatactggaatgaacatggcttcttcact |
176 |
Q |
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| T |
15518099 |
aatacatacccttgattctttcccttccttcttataacgtagtagcgattagaagacaatggttgatttaatactggaatgaacatagcttcttcact |
15518002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 15550682 - 15550606
Alignment:
| Q |
81 |
tacatacccttgatatttcccctcccttcttataacatagtagcgattcgaagacaacggttgattcaatactggaa |
157 |
Q |
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|||||||||||||| ||||||| ||||| ||| ||||| || || ||||||||||| |||||||||||||| |||| |
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| T |
15550682 |
tacatacccttgattcttccccttccttcgtatgacataataacggttcgaagacaatggttgattcaataccggaa |
15550606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 15522268 - 15522218
Alignment:
| Q |
224 |
aattgatggttacatctttgttctgagggataggaaaattcttgattctat |
274 |
Q |
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|||||||||||| || |||||||||||| | |||||||||||||||||||| |
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| T |
15522268 |
aattgatggttaaatttttgttctgaggtaaaggaaaattcttgattctat |
15522218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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