View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_high_53 (Length: 274)

Name: NF8061_high_53
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_high_53
NF8061_high_53
[»] chr8 (9 HSPs)
chr8 (7-79)||(30444928-30445000)
chr8 (8-74)||(34008802-34008868)
chr8 (8-77)||(26520435-26520504)
chr8 (10-57)||(15186815-15186862)
chr8 (8-74)||(29611391-29611457)
chr8 (13-80)||(42739946-42740013)
chr8 (11-57)||(3853654-3853700)
chr8 (11-57)||(3858112-3858158)
chr8 (8-57)||(44889392-44889441)
[»] chr7 (10 HSPs)
chr7 (6-79)||(30080771-30080844)
chr7 (8-74)||(30587875-30587941)
chr7 (8-74)||(32650594-32650660)
chr7 (11-74)||(40853990-40854053)
chr7 (6-57)||(25189196-25189247)
chr7 (8-74)||(13814966-13815032)
chr7 (8-74)||(14790135-14790200)
chr7 (12-74)||(19865530-19865592)
chr7 (8-44)||(3905631-3905667)
chr7 (8-44)||(40495281-40495317)
[»] chr5 (11 HSPs)
chr5 (11-80)||(15270840-15270909)
chr5 (8-74)||(33146194-33146260)
chr5 (8-74)||(34105092-34105158)
chr5 (8-79)||(22305110-22305181)
chr5 (8-57)||(22766990-22767039)
chr5 (8-56)||(37090320-37090368)
chr5 (7-57)||(25935272-25935322)
chr5 (8-74)||(28490014-28490079)
chr5 (7-57)||(37722876-37722926)
chr5 (8-57)||(8674459-8674508)
chr5 (12-73)||(28489485-28489546)
[»] chr4 (12 HSPs)
chr4 (8-57)||(41139511-41139560)
chr4 (6-57)||(42776675-42776726)
chr4 (8-74)||(42775626-42775692)
chr4 (8-74)||(53760776-53760842)
chr4 (8-57)||(29091175-29091224)
chr4 (11-74)||(26250984-26251047)
chr4 (20-74)||(4441412-4441466)
chr4 (8-74)||(56339154-56339220)
chr4 (12-57)||(16300209-16300254)
chr4 (7-80)||(21012561-21012634)
chr4 (8-57)||(26534531-26534580)
chr4 (8-57)||(40548204-40548253)
[»] chr3 (12 HSPs)
chr3 (6-79)||(54761547-54761620)
chr3 (6-72)||(55460363-55460429)
chr3 (12-80)||(332051-332119)
chr3 (8-80)||(2104749-2104821)
chr3 (8-80)||(9007440-9007512)
chr3 (11-74)||(46429417-46429480)
chr3 (6-57)||(13176545-13176596)
chr3 (6-57)||(13339446-13339497)
chr3 (8-59)||(26323392-26323443)
chr3 (11-74)||(38506864-38506927)
chr3 (8-57)||(21307517-21307566)
chr3 (6-74)||(47714290-47714359)
[»] chr2 (12 HSPs)
chr2 (6-74)||(20935728-20935795)
chr2 (6-74)||(44205642-44205710)
chr2 (11-74)||(14537274-14537337)
chr2 (8-79)||(41585676-41585747)
chr2 (8-74)||(8736427-8736493)
chr2 (20-80)||(11684674-11684734)
chr2 (11-74)||(3345766-3345829)
chr2 (11-74)||(11824755-11824818)
chr2 (7-57)||(11532238-11532288)
chr2 (12-74)||(11607242-11607304)
chr2 (11-57)||(40026102-40026148)
chr2 (8-57)||(32839634-32839683)
[»] chr1 (14 HSPs)
chr1 (11-79)||(15245458-15245526)
chr1 (8-72)||(44571225-44571288)
chr1 (11-74)||(32572943-32573006)
chr1 (8-79)||(50471766-50471837)
chr1 (6-71)||(52135609-52135674)
chr1 (8-72)||(37447345-37447409)
chr1 (11-74)||(27935507-27935569)
chr1 (11-73)||(23536142-23536204)
chr1 (7-57)||(26501064-26501114)
chr1 (8-74)||(41822529-41822595)
chr1 (8-74)||(48953590-48953655)
chr1 (11-80)||(40264045-40264114)
chr1 (8-57)||(47165198-47165247)
chr1 (8-56)||(39887166-39887214)
[»] chr6 (3 HSPs)
chr6 (8-79)||(8475177-8475248)
chr6 (12-79)||(1195349-1195416)
chr6 (11-57)||(776155-776201)
[»] scaffold0039 (1 HSPs)
scaffold0039 (8-74)||(109052-109118)
[»] scaffold0169 (1 HSPs)
scaffold0169 (8-57)||(4113-4162)
[»] scaffold0002 (1 HSPs)
scaffold0002 (6-57)||(130392-130443)
[»] scaffold0027 (1 HSPs)
scaffold0027 (7-57)||(10924-10974)
[»] scaffold0065 (1 HSPs)
scaffold0065 (8-80)||(9572-9645)


Alignment Details
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 30444928 - 30445000
Alignment:
Q  7 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 79  Q
    |||||||||||| |||||||| | ||||||||||||||  |||||||||||||||| ||||||||||| ||||    
T  30444928 catccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattcctccatccaaacacactctta 30445000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 34008868 - 34008802
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  34008868 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattcccccatccaaacacac 34008802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 26520435 - 26520504
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacact 77  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||||  | ||||||||||||||    
T  26520435 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattccctcatccaaacacacact 26520504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 15186815 - 15186862
Alignment:
Q  10 ccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||||||||| | ||| |||||||||||||||||||||||    
T  15186815 ccaaacaatagaattcaccttaaactatttgaatttactcaaaacatt 15186862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 29611457 - 29611391
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||||||||||  ||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  29611457 atccaaacaatgaaattcacctcaaagtatttgaattccctcaaaacattcccccatccaaacacac 29611391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 42740013 - 42739946
Alignment:
Q  13 aacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 80  Q
    ||||||| ||||||  | |||||| |||||||  |||||||||||||||| ||||||||||| |||||    
T  42740013 aacaataaaattcatctcaaagtagttgaattccctcaaaacattcctccatccaaacacactcttaa 42739946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 3853700 - 3853654
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||||||||||||| | |||||| |||||||| |||||||||||    
T  3853700 caaacaatagaattcacctcaaagtagttgaatttcctcaaaacatt 3853654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 3858158 - 3858112
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||||||||||||| | |||||| |||||||| |||||||||||    
T  3858158 caaacaatagaattcacctcaaagtagttgaatttcctcaaaacatt 3858112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 44889441 - 44889392
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  44889441 atccaaacaatggaattcacatcaaagtatttgaattccctcaaaacatt 44889392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 30080771 - 30080844
Alignment:
Q  6 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 79  Q
    ||||||||||||| |||||||| | ||||||||| ||||| ||||||||||||| || ||||||||||| ||||    
T  30080771 tcatccaaacaatggaattcacctgaaagtatttaaatttcctcaaaacattcccccatccaaacacactctta 30080844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 30587875 - 30587941
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  30587875 atccaaacaatggaattcacattaaagtatttgaattccctcaaaacattcccccatccaaacacac 30587941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 32650660 - 32650594
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||||||||||| ||||||| | ||||||||||||||  |||||||||||||||| || ||||||||    
T  32650660 atccaaacaataaaattcacctcaaagtatttgaattccctcaaaacattcctccatcgaaacacac 32650594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 40854053 - 40853990
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  40854053 caaacaatagaattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacacac 40853990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 25189196 - 25189247
Alignment:
Q  6 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||||  ||||||||| ||||||||||||||  |||||||||||    
T  25189196 tcatccaaacaatgaaattcacttcaaagtatttgaattccctcaaaacatt 25189247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 13814966 - 13815032
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||| ||| |||||||| | ||||||||||||||  ||||||||||||| |  |||||||||||    
T  13814966 atccaaataatggaattcacatcaaagtatttgaattccctcaaaacattcccctatccaaacacac 13815032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 14790200 - 14790135
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||| |||| ||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  14790200 atccaaataataaaattcacctcaaagtatttgaattccctcaaaacattcc-ccatccaaacacac 14790135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 19865530 - 19865592
Alignment:
Q  12 aaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||||||  ||||||| | ||||||||||||||| |||||||||||||  | |||||||||||    
T  19865530 aaacaatgaaattcacctcaaagtatttgaatttcctcaaaacattccctcatccaaacacac 19865592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 3905631 - 3905667
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatt 44  Q
    |||||||||||||||||||| | ||||||||||||||    
T  3905631 atccaaacaatagaattcacctcaaagtatttgaatt 3905667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 40495317 - 40495281
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatt 44  Q
    |||||||||||||||||||| | ||||||||||||||    
T  40495317 atccaaacaatagaattcacatcaaagtatttgaatt 40495281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 15270840 - 15270909
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 80  Q
    |||||||| |||||||| | ||||||||||||||  |||||||||||||||| ||||||||||| |||||    
T  15270840 caaacaatggaattcacctcaaagtatttgaattccctcaaaacattcctccatccaaacacactcttaa 15270909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 33146260 - 33146194
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  33146260 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattcccccatccaaacacac 33146194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 34105158 - 34105092
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||||||||||  ||||||  | ||||||||||||||| |||||||||||||||| |||||||||||    
T  34105158 atccaaacaatgaaattcatctcaaagtatttgaattttctcaaaacattcctccatccaaacacac 34105092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 22305181 - 22305110
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 79  Q
    ||||||||||| |||||||| | |||||| |||||||  ||||||||||||| || ||||||||||| ||||    
T  22305181 atccaaacaatggaattcacctcaaagtagttgaattccctcaaaacattcccccatccaaacacactctta 22305110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 22767039 - 22766990
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||||||||||| | ||||||||||||||  |||||||||||    
T  22767039 atccaaacaatagaattcaccttaaagtatttgaattccctcaaaacatt 22766990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 37090368 - 37090320
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacat 56  Q
    ||||||||||| |||||||| ||||| ||||||||||| ||||||||||    
T  37090368 atccaaacaatggaattcacataaaaatatttgaatttcctcaaaacat 37090320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 25935272 - 25935322
Alignment:
Q  7 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||| |||||||| | ||||||||||||||| |||| ||||||    
T  25935272 catccaaacaatggaattcacctcaaagtatttgaatttcctcataacatt 25935322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 28490079 - 28490014
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||| ||| || |||||||||||    
T  28490079 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaaca-tcccccatccaaacacac 28490014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 37722876 - 37722926
Alignment:
Q  7 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  37722876 catccaaacaatggaattcacctcaaagtatttgaattccctcaaaacatt 37722926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 8674459 - 8674508
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||||||| |||||||||||||| || |||||||| || ||||||||    
T  8674459 atccaaacaatggaattcacttaaaattaattgaattttcttaaaacatt 8674508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 28489546 - 28489485
Alignment:
Q  12 aaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacaca 73  Q
    ||||||| |||||||| | ||||||||||||||  ||||||| ||||| || ||||||||||    
T  28489546 aaacaatggaattcacctcaaagtatttgaattctctcaaaatattcccccatccaaacaca 28489485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 41139560 - 41139511
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  41139560 atccaaacaatagaattcacctaaaagtatttgaatttcctcaaaacatt 41139511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 42776726 - 42776675
Alignment:
Q  6 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  42776726 tcatccaaacaatgaaattcacctaaaagtatttgaatttactcaaaacatt 42776675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 42775692 - 42775626
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  42775692 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattcccccatccaaacacac 42775626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 53760776 - 53760842
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||||||||||||||||||| | ||| ||||||||||  ||||||||||||| || | |||||||||    
T  53760776 atccaaacaatagaattcacatcaaaatatttgaattccctcaaaacattcccccattcaaacacac 53760842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 29091224 - 29091175
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||||||||||| | ||||||||||||||  |||||||||||    
T  29091224 atccaaacaatagaattcacatcaaagtatttgaattccctcaaaacatt 29091175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 26250984 - 26251047
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||| |||||||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  26250984 caaataatagaattcacctcaaagtagttgaattccctcaaaacattcccccatccaaacacac 26251047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 4441412 - 4441466
Alignment:
Q  20 gaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||||||| | |||||| |||||||| ||||||||||||| || |||||||||||    
T  4441412 gaattcacctcaaagtagttgaatttcctcaaaacattcccccatccaaacacac 4441466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 56339220 - 56339154
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||||||||||  ||||||| | ||||||||||||||  |||||||||||||  | |||||||||||    
T  56339220 atccaaacaatgaaattcacatcaaagtatttgaattccctcaaaacattccatcatccaaacacac 56339154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 16300209 - 16300254
Alignment:
Q  12 aaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||| |||||||| | ||||||||||||||| |||||||||||    
T  16300209 aaacaatggaattcacctcaaagtatttgaattttctcaaaacatt 16300254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 21012561 - 21012634
Alignment:
Q  7 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 80  Q
    |||| ||||||| |||||||| | ||| ||||| ||||  |||||||||||| ||| ||||||||||| |||||    
T  21012561 catctaaacaatggaattcacctcaaaatatttaaattccctcaaaacattcgtccatccaaacacactcttaa 21012634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 26534580 - 26534531
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||||||||||||||||   ||||||||||||||  |||||||||||    
T  26534580 atccaaacaatagaattcacaacaaagtatttgaattccctcaaaacatt 26534531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 40548204 - 40548253
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||||||| ||||||||   ||||||||||||||| |||||||||||    
T  40548204 atccaaacaatggaattcaccccaaagtatttgaatttcctcaaaacatt 40548253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 54761547 - 54761620
Alignment:
Q  6 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 79  Q
    ||||||||||||| ||||| || | ||||||||||||||  |||||||||||||||| ||||||||||| ||||    
T  54761547 tcatccaaacaatggaatttacatcaaagtatttgaattccctcaaaacattcctccatccaaacacactctta 54761620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 55460429 - 55460363
Alignment:
Q  6 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacac 72  Q
    |||||||||| || ||||||||||| |||||||||||||  |||||||||||||| | |||||||||    
T  55460429 tcatccaaacgatggaattcacttacaagtatttgaattccctcaaaacattcctacatccaaacac 55460363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 332051 - 332119
Alignment:
Q  12 aaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 80  Q
    |||||||||||||||| | |||||| |||||||  |||||||||||| ||| ||||||||||| |||||    
T  332051 aaacaatagaattcaccttaaagtagttgaattccctcaaaacattcttccatccaaacacactcttaa 332119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 2104821 - 2104749
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 80  Q
    |||||||||||||||||||| | ||||||||||||||  ||| ||||||||| |  ||||||||||| |||||    
T  2104821 atccaaacaatagaattcacatcaaagtatttgaattccctcgaaacattcccctatccaaacacactcttaa 2104749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 9007440 - 9007512
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 80  Q
    |||||||||||  ||||||| ||||||||||||||||   |||||||||||| || ||||||||||| |||||    
T  9007440 atccaaacaatgaaattcacctaaaagtatttgaattcgttcaaaacattcccccatccaaacacactcttaa 9007512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 46429480 - 46429417
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  46429480 caaacaatagaattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacacac 46429417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 13176545 - 13176596
Alignment:
Q  6 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||||||||| ||| ||||||| ||||||||  |||||||||||    
T  13176545 tcatccaaacaatagaatccacctaaaagtctttgaattccctcaaaacatt 13176596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 13339446 - 13339497
Alignment:
Q  6 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||||||||| ||| ||||||| ||||||||  |||||||||||    
T  13339446 tcatccaaacaatagaatccacctaaaagtctttgaattctctcaaaacatt 13339497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 26323443 - 26323392
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcc 59  Q
    ||||||||||  |||||||| ||||||||||||||||  |||||||||||||    
T  26323443 atccaaacaacggaattcacctaaaagtatttgaattacctcaaaacattcc 26323392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 38506864 - 38506927
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||||||| |||||||| | ||| ||||||||||  |||||||||||||||  |||||||||||    
T  38506864 caaacaatggaattcacctcaaattatttgaattccctcaaaacattcctctatccaaacacac 38506927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 21307517 - 21307566
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  21307517 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacatt 21307566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 47714359 - 47714290
Alignment:
Q  6 tcatccaaacaatagaattcactt-aaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||||||||||||  ||||||| | |||||||||||||||  |||||||||||| ||| ||||| |||||    
T  47714359 tcatccaaacaatgaaattcacatcaaaagtatttgaattccctcaaaacattcatccatccaagcacac 47714290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 20935795 - 20935728
Alignment:
Q  6 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||||| |||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  20935795 tcatccaaacaatggaattcacatcaaagtatttgaattccctcaaaacattcc-ccatccaaacacac 20935728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 44205642 - 44205710
Alignment:
Q  6 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||| ||||||||| || ||||||||||||||||  ||||||||||| | || |||||||||||    
T  44205642 tcatccaaataatagaatttacataaaagtatttgaattccctcaaaacatttccccatccaaacacac 44205710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 14537274 - 14537337
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  14537274 caaacaatagaattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacacac 14537337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 41585676 - 41585747
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 79  Q
    |||||||||||| | ||||||| ||||||||||||||  ||||||||||| | || ||||||||||| ||||    
T  41585676 atccaaacaataaatttcacttcaaagtatttgaattccctcaaaacatttcaccatccaaacacactctta 41585747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 8736427 - 8736493
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||||  | |||||||||||    
T  8736427 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattccctcatccaaacacac 8736493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 11684674 - 11684734
Alignment:
Q  20 gaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 80  Q
    |||||||| | |||||| |||||||  |||||||||||||||| ||||||||||| |||||    
T  11684674 gaattcacctcaaagtagttgaattccctcaaaacattcctccatccaaacacactcttaa 11684734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 3345829 - 3345766
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||||||||||||| || | |||||| |||||||  ||||||||||||| || |||||||||||    
T  3345829 caaacaatagaatttaccttaaagtagttgaattccctcaaaacattcccccatccaaacacac 3345766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 11824755 - 11824818
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||| ||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  11824755 caaacaatataattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacacac 11824818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 11532238 - 11532288
Alignment:
Q  7 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  11532238 catccaaacaatggaattcacctcaaagtatttgaattccctcaaaacatt 11532288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 11607304 - 11607242
Alignment:
Q  12 aaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||| |||||||| | ||||||||||||||  ||||||||||| | || |||||||||||    
T  11607304 aaacaatggaattcacctcaaagtatttgaattccctcaaaacattaccccatccaaacacac 11607242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 40026148 - 40026102
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||||||    
T  40026148 caaacaatagaattcacctcaaagtatttaaatttcctcaaaacatt 40026102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 32839634 - 32839683
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  32839634 atccaaacaatggaattcacgtcaaagtatttgaattccctcaaaacatt 32839683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 15245526 - 15245458
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 79  Q
    ||||||||||||||||| | |||||| |||||||  ||||||||||||| || ||||||||||| ||||    
T  15245526 caaacaatagaattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacacactctta 15245458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 44571288 - 44571225
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacac 72  Q
    ||||||||||| |||||||||| ||||||||||||||  ||||||||||||| || |||||||||    
T  44571288 atccaaacaatggaattcacttcaaagtatttgaattccctcaaaacattcc-ccatccaaacac 44571225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 32573006 - 32572943
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  32573006 caaacaatagaattcacctcaaagtagttgaattccctcaaaacattcccccatccaaacacac 32572943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 50471837 - 50471766
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 79  Q
    |||||||||||| ||||||| | ||||||||||||||  |||||||| |||| || ||||||||||| ||||    
T  50471837 atccaaacaataaaattcacctgaaagtatttgaattccctcaaaactttcccccatccaaacacactctta 50471766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 52135609 - 52135674
Alignment:
Q  6 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaaca 71  Q
    |||||||||||||| |||| || ||||| ||||||||||  ||||||||||| |||| ||||||||    
T  52135609 tcatccaaacaataaaatttacctaaaaatatttgaattccctcaaaacatttctccatccaaaca 52135674  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 37447345 - 37447409
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacac 72  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||||||| |  |||||||||    
T  37447345 atccaaacaatggaattcacatcaaagtatttgaattctctcaaaacattcccctatccaaacac 37447409  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 27935569 - 27935507
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||||||||| | |||||| |||||||| ||||||||||| | || |||||||||||    
T  27935569 caaacaatagaattcacctgaaagtagttgaattttctcaaaacatttc-ccatccaaacacac 27935507  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 23536142 - 23536204
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacaca 73  Q
    ||||||||| ||||||| | |||||| |||||||  ||||||||||||| || ||||||||||    
T  23536142 caaacaatataattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacaca 23536204  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 26501064 - 26501114
Alignment:
Q  7 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  26501064 catccaaacaatggaattcacatcaaagtatttgaattccctcaaaacatt 26501114  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 41822529 - 41822595
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||| |||||||  | ||||||||||||||  |||||||||||| | | |||||||||||    
T  41822529 atccaaacaatggaattcatcttaaagtatttgaattccctcaaaacattcattcatccaaacacac 41822595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 48953655 - 48953590
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    |||||||||||||||||||| | ||| ||||||||||   |||||||||||| || |||||||||||    
T  48953655 atccaaacaatagaattcacctcaaa-tatttgaattccttcaaaacattcccccatccaaacacac 48953590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 40264114 - 40264045
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 80  Q
    ||||||||||||||||  | |||||| |||||||  ||||||||||||| |  ||||||||||| |||||    
T  40264114 caaacaatagaattcatctcaaagtagttgaattccctcaaaacattcccctatccaaacacactcttaa 40264045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 47165198 - 47165247
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  47165198 atccaaacaatggaattcaccttaaagtatttgaattccctcaaaacatt 47165247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 39887214 - 39887166
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacat 56  Q
    ||||||||||| |||||||| | |||||||||||||||  |||||||||    
T  39887214 atccaaacaatggaattcacatcaaagtatttgaatttcttcaaaacat 39887166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 8475248 - 8475177
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 79  Q
    ||||||||||| ||||||||  |||||||||||||||  ||||||||||| | || ||||||||||| ||||    
T  8475248 atccaaacaatggaattcacccaaaagtatttgaattccctcaaaacatttccccatccaaacacactctta 8475177  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 1195416 - 1195349
Alignment:
Q  12 aaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 79  Q
    ||||||| |||||||| | |||||||||||| |  ||||||||||||| || ||||||||||| ||||    
T  1195416 aaacaatggaattcacctcaaagtatttgaaatccctcaaaacattcccccatccaaacacactctta 1195349  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 776155 - 776201
Alignment:
Q  11 caaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    ||||||||||||||||| | |||||| |||||||| |||||||||||    
T  776155 caaacaatagaattcaccttaaagtagttgaatttcctcaaaacatt 776201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 109118 - 109052
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 74  Q
    ||||||||||| |||||||| | ||||||||| ||||  ||||||||||||| || |||||||||||    
T  109118 atccaaacaatggaattcacatcaaagtatttaaattccctcaaaacattcccccatccaaacacac 109052  T

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Target: scaffold0169 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 4162 - 4113
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||||||||||| | ||||||||||||||  |||||||||||    
T  4162 atccaaacaatagaattcacctcaaagtatttgaattccctcaaaacatt 4113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 130443 - 130392
Alignment:
Q  6 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||||||||| ||| ||||||| ||||||||  |||||||||||    
T  130443 tcatccaaacaatagaatccacctaaaagtctttgaattccctcaaaacatt 130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 10974 - 10924
Alignment:
Q  7 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 57  Q
    |||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  10974 catccaaacaatggaattcacgtcaaagtatttgaattccctcaaaacatt 10924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 9572 - 9645
Alignment:
Q  8 atccaaacaatagaattcacttaaaagtatttgaatttactc-aaaacattcctccttccaaacacacacttaa 80  Q
    ||||||||||| ||||| || | ||||||||||||||  ||| ||||||||||||| || |||||||| |||||    
T  9572 atccaaacaatggaatttacctcaaagtatttgaattctctcaaaaacattcctccatctaaacacactcttaa 9645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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