View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_54 (Length: 269)
Name: NF8061_high_54
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 39296458 - 39296714
Alignment:
| Q |
1 |
aaagaagttttatgcattcttttcaaagaacaaaaattttgaatttaaaaactggccacgaaccaacacaattcaagagaagatcataatttgagtcttc |
100 |
Q |
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| T |
39296458 |
aaagaagttttatgcattcttttcaaagaacaaaaattttgaatttaaaaactggccacgaaccaacacaattcaagagaagatcataatttgagtcttc |
39296557 |
T |
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| Q |
101 |
aaaagaacatctcccaacaggtaaatgcttttgacaatagtcaataagaaatcagcatatcaccttcnnnnnnnnggaaactcgatcggtatccagttta |
200 |
Q |
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| T |
39296558 |
aaaagaacatctcccaacaggtaaatgcttttgacaatagtcaataagaaatcagcatatcacctt-tttttttttgaaactcgatcggtatccggttta |
39296656 |
T |
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| Q |
201 |
agctatgaaccgactcaacatatcacttttgtctccctcatcttaggtattctgaaca |
258 |
Q |
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| T |
39296657 |
agctatgaaccgactcaacatatcactttcgtctccctcatctgagatactctgaaca |
39296714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 38228988 - 38229054
Alignment:
| Q |
58 |
acgaaccaacacaattcaagagaagatcataattt-gagtcttcaaaagaacatctcccaacaggta |
123 |
Q |
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| T |
38228988 |
acgaaccaatacaattcaagcgaacatcatcattttgagtcttcaagagaacatctcccaacaggta |
38229054 |
T |
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