View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_58 (Length: 257)
Name: NF8061_high_58
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_58 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: scaffold0631 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 5505 - 5753
Alignment:
| Q |
1 |
cataggtgcttcgtcccatattatgagtcttgcgcgcaatatcaattgtcccaatgggcttaatggttcaatgctgcaagttgaacattcgtcaacaatg |
100 |
Q |
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| T |
5505 |
cataggtgcttcgtcccatattatgagtcttgcgcgcaatatcaattgtcccaatgggcttaatggttcaattttgcaagttgaacattcgtcaacaatg |
5604 |
T |
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| Q |
101 |
aatggtatatggaacctggaatgagctgttctctcacccggaataagaagcgctgctataccacttgacgctactgttagaacaatttgtcctttggatc |
200 |
Q |
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| T |
5605 |
aatggtatatggaacctggaatgagttgttctcccaccaggaataagaagggctgctataccacttgacgctactgttagaacaatttgtcctttggatc |
5704 |
T |
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| Q |
201 |
tcaatgcagatgacatagctctccaaataaaagtttttcctgtaccacc |
249 |
Q |
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| T |
5705 |
tcaatgcagatgacatagctctccaaataaaagtttttcctgtaccacc |
5753 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 41532860 - 41532948
Alignment:
| Q |
155 |
gctataccacttgacgctactgttagaacaatttgtcctttggatctcaatgcagatgacatagctctccaaataaaagtttttcctgt |
243 |
Q |
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| T |
41532860 |
gctatcccacttgaagcaacagttaagacaatttgaccttttgatctcaatgctgctgacatagccctccaaataaaagtcttccctgt |
41532948 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 44583481 - 44583393
Alignment:
| Q |
155 |
gctataccacttgacgctactgttagaacaatttgtcctttggatctcaatgcagatgacatagctctccaaataaaagtttttcctgt |
243 |
Q |
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| T |
44583481 |
gctattccactggatgcaactgttagaacaatatctccttttgagcgtaatgcagctgacatagccctccaaatataagtctttcctgt |
44583393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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