View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8061_high_60 (Length: 249)
Name: NF8061_high_60
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_60 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 38219167 - 38218931
Alignment:
| Q |
13 |
aatatgctgattggagttatgataattagctccatggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgcta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38219167 |
aatatgctgattggagttatgataattagctccttggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgcta |
38219068 |
T |
|
| Q |
113 |
agatattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38219067 |
agatattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttccaatccaagaaagagtatttatttggtagaattgatat |
38218968 |
T |
|
| Q |
213 |
gcaactcaaacttgttgctggaaattctgctggaact |
249 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38218967 |
gcaacttaaacttgttgctggaaattctgctggaact |
38218931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 38214944 - 38214710
Alignment:
| Q |
15 |
tatgctgattggagttatgataattagctccatggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgctaag |
114 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214944 |
tatgctgattggagtcatgataattagctccttggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgctaag |
38214845 |
T |
|
| Q |
115 |
atattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214844 |
atattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttccaatccaagaaagagtatttatttggtagaattgatatgc |
38214745 |
T |
|
| Q |
215 |
aactcaaacttgttgctggaaattctgctggaact |
249 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
38214744 |
aacttaaacttgttgctggaaattctgctggaact |
38214710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 42990598 - 42990831
Alignment:
| Q |
15 |
tatgctgattggagttatgataattagctccatggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgctaag |
114 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| || |||||||||||| ||| || ||| ||||||| ||||||||||| ||||| || |||||||||||| |
|
|
| T |
42990598 |
tatgctgattggagctatgatagttagctccttgatagctacatgttgtgcaaatttctaccaagattttgatctaacatggggcgatcaccgtgctaag |
42990697 |
T |
|
| Q |
115 |
atattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgc |
214 |
Q |
| |
|
| |||||| |||||||| ||||| || |||||||| || ||| ||| ||||||||||| || |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
42990698 |
acattcaacggtggtcagcttctttcactttctctcgacaaagtctccggctctggcttccagtccaagaaagagtacttattcggtagaattgatatgc |
42990797 |
T |
|
| Q |
215 |
aactcaaacttgttgctggaaattctgctggaac |
248 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| |
|
|
| T |
42990798 |
aactcaaactggttgctggaaactctgctggaac |
42990831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 38 - 245
Target Start/End: Original strand, 35016214 - 35016421
Alignment:
| Q |
38 |
ttagctccatggtagctacatgttctgctaacttcaaccaagactttgatctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttct |
137 |
Q |
| |
|
||||||| ||||| ||||| ||| ||| || ||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35016214 |
ttagctctatggtggctacttgtgctggtagtttctaccaagactttgatctaacatggggtgataaccgtgctaagatattcaatggtggtcaacttct |
35016313 |
T |
|
| Q |
138 |
atctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaat |
237 |
Q |
| |
|
||| ||||| ||||| ||| ||||||||||||||| |||| |||| |||||| ||||||| |||||||||||||| || || ||||||||||| || |
|
|
| T |
35016314 |
atcactttcccttgacaaagtctctggctctggcttcaaatcaaagagagagtacctatttgggagaattgatatgcagcttaagcttgttgctggcaac |
35016413 |
T |
|
| Q |
238 |
tctgctgg |
245 |
Q |
| |
|
|||||||| |
|
|
| T |
35016414 |
tctgctgg |
35016421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 53492319 - 53492488
Alignment:
| Q |
76 |
caagactttgatctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttc |
175 |
Q |
| |
|
|||||||||||| |||| ||||| || |||||||| ||| |||| |||| |||||||| |||| ||||||||||| ||||||| || ||||||| |
|
|
| T |
53492319 |
caagactttgatataacatggggggatggtcgtgctaaaatactcaacagtggccaacttcttactctatctcttgataagtcctctggttcaggctttc |
53492418 |
T |
|
| Q |
176 |
aatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattctgctgg |
245 |
Q |
| |
|
||||||| || || || | ||||| | ||||||||||||||| ||||||||| |||| || |||||||| |
|
|
| T |
53492419 |
aatccaaaaatgaatacctttttggcaaaattgatatgcaacttaaacttgttcctggcaactctgctgg |
53492488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 53489692 - 53489573
Alignment:
| Q |
126 |
tggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaactt |
225 |
Q |
| |
|
|||||| ||||| |||| ||||| |||| ||||||||||||||||||||||||||| || | ||| | | ||| | ||||| |||||| | |||||| |
|
|
| T |
53489692 |
tggtcagcttcttactctgtctctagatagaacctctggctctggctttcaatccaataatcaatatctttatggaaagattgacatgcaaattaaactt |
53489593 |
T |
|
| Q |
226 |
gttgctggaaattctgctgg |
245 |
Q |
| |
|
||| |||||||||| ||||| |
|
|
| T |
53489592 |
gttcctggaaattcagctgg |
53489573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 53498697 - 53498802
Alignment:
| Q |
140 |
ctctttctcttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattc |
239 |
Q |
| |
|
|||| |||||||| ||| ||||||| || |||||||||||||| || || || |||||||| | |||||||||||| | || |||||| | ||||| || |
|
|
| T |
53498697 |
ctctatctcttgacaaagcctctggttcaggctttcaatccaaaaatgaatacttatttggcaaaattgatatgcagattaagcttgttccaggaaactc |
53498796 |
T |
|
| Q |
240 |
tgctgg |
245 |
Q |
| |
|
|||||| |
|
|
| T |
53498797 |
tgctgg |
53498802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 53494719 - 53494819
Alignment:
| Q |
148 |
cttgataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattctgctggaa |
247 |
Q |
| |
|
||||| ||| ||||||| ||||| |||||||||||||| || ||| | ||||| | ||||||||||| ||||| ||||| ||||||| ||||| |||| |
|
|
| T |
53494719 |
cttgacaaagcctctggttctggatttcaatccaagaatgaatatctctttggcaacattgatatgcagctcaagcttgtacctggaaactctgcaggaa |
53494818 |
T |
|
| Q |
248 |
c |
248 |
Q |
| |
|
| |
|
|
| T |
53494819 |
c |
53494819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 53501885 - 53501925
Alignment:
| Q |
205 |
attgatatgcaactcaaacttgttgctggaaattctgctgg |
245 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
53501885 |
attgatatgcaactcaaacttgtccctggaaactctgctgg |
53501925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 37188281 - 37188450
Alignment:
| Q |
76 |
caagactttgatctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttc |
175 |
Q |
| |
|
|||||||||||| |||| ||||| || |||||||| ||| |||| ||| |||||||| || | |||||||| ||| ||||||||||||| |||| |
|
|
| T |
37188281 |
caagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttc |
37188380 |
T |
|
| Q |
176 |
aatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattctgctgg |
245 |
Q |
| |
|
||||||| || || || | ||||| | |||||||||||| || ||||||||| |||| || |||||||| |
|
|
| T |
37188381 |
aatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctgg |
37188450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 16941458 - 16941552
Alignment:
| Q |
151 |
gataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattctgctgg |
245 |
Q |
| |
|
|||||| | |||||||||||||||| ||||| | ||||| || ||||| | |||||| ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
16941458 |
gataaatcttctggctctggctttcgttccaaatatgagtacttgtttgggaaaattgacatgcaactcaaacttgtagctggtaactctgctgg |
16941552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 17012123 - 17012217
Alignment:
| Q |
151 |
gataaaacctctggctctggctttcaatccaagaaagagtatttatttggtagaattgatatgcaactcaaacttgttgctggaaattctgctgg |
245 |
Q |
| |
|
|||||| | |||||||||||||||| ||||| | ||||| || ||||| | |||||| ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
17012123 |
gataaatcttctggctctggctttcgttccaaatatgagtacttgtttgggaaaattgacatgcaactcaaacttgtagctggtaactctgctgg |
17012217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University