View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8061_high_62 (Length: 245)
Name: NF8061_high_62
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_62 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 18574950 - 18575176
Alignment:
| Q |
19 |
atacgatctgagatgttgaaaaatgagaaaaagggagagcactagagctacaagcacagaacacccggcaacgatgagagcaggttggtgaacaatgtta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18574950 |
atacgatctgagatgttgaaaaatgagaaaaagggagagcactagagctacaagcacagaacacccggcaacgatgagagcaggttggtgaacaatgtta |
18575049 |
T |
|
| Q |
119 |
tagattccttcatagtttgagaaatgatttgatgccattcctcaagcatccttatctccaaagtacttcagaattttcgcaggtaaatgggcatttatga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18575050 |
tagattccttcatagtttgagaaatgatttgatgccattcctcaagcatccttatctccaaagtacttcagaattttcgcaggtaaatgagcatttatga |
18575149 |
T |
|
| Q |
219 |
cacctctttcctattgttctgtaactc |
245 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
18575150 |
cacctctttcctattgttctgtaactc |
18575176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University