View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_70 (Length: 228)
Name: NF8061_high_70
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 37767923 - 37767717
Alignment:
| Q |
1 |
ggacctttatatgcgtctgctttcaaccctctaatgcttttgattgtagctttcgtcgcatccatgcttttggatgagaagttaaacctcggaaggtata |
100 |
Q |
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| T |
37767923 |
ggacctttatatgcgtctgctttcaaccctctaatgcttttgattgtagctttcgtcgcatccatgctcttggatgagaagttaaacctcggaaggtata |
37767824 |
T |
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| Q |
101 |
tattatatactaaatctaagttcttttaaatgagtatgcatggatcctttgcagagagattgaaccaatttgaatgttgttattggatctgatgatatat |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37767823 |
tattatatactaaatctaagttcatttaaatgagtatgcatggatcctttgca--gagattgaaccaatttgaatgttgttattggatctgatgatatat |
37767726 |
T |
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| Q |
201 |
agttggtct |
209 |
Q |
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||||||||| |
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| T |
37767725 |
agttggtct |
37767717 |
T |
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