View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_high_72 (Length: 222)
Name: NF8061_high_72
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_high_72 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 6184614 - 6184804
Alignment:
| Q |
18 |
caaacttcttcaaaaactcaaccatcacaacttgaagcaccaatgtcacaccaataattcccaaaaacaacttgctcttgaatattccttcaaagacatt |
117 |
Q |
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| T |
6184614 |
caaacttcttcaaaaactcaaccatcacaacttgaagcaccaatgtcacaccaataattcccaaaaacaacttgctcttgaatattccttcaaagacatt |
6184713 |
T |
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| Q |
118 |
ctttttctccaatttccttgcattaaactcattaaacacttgacatagaacaaatgtattaaaaatcaatgtgtcatttacctttgatgtc |
208 |
Q |
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| T |
6184714 |
ctttttctccaatttccttgcattaaactcattaaacacttgacatagaacaaatgtattaaaaatcaatgtgtcatttacctttgatgtc |
6184804 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 4235490 - 4235673
Alignment:
| Q |
18 |
caaacttcttcaaaaactcaaccatcacaacttgaagcaccaatgtcacaccaataattcccaaaaacaacttgctcttgaatattccttcaaagacatt |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| ||||| |
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| T |
4235490 |
caaactttttcaaaaactcaaccatcacaacttgaagcaccaatgtcacaccaacaattcccaaaaacaacttgctcttaaatatcccttcaaacacatt |
4235589 |
T |
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| Q |
118 |
ctttttctccaatttccttgcattaaactcattaaacacttgacatagaacaaatgtattaaaaatcaatgtgtcatttacctt |
201 |
Q |
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| T |
4235590 |
cttcttctccaatttccttgcattaaactcattaaacacttgacaaagaacaaatgtattgaatattaatgtgtcatttacctt |
4235673 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 30441730 - 30441627
Alignment:
| Q |
105 |
cttcaaagacattctttttctccaatttccttgcattaaactcattaaacacttgacatagaacaaatgtattaaaaatcaatgtgtcatttacctttga |
204 |
Q |
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||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
30441730 |
cttcaaacacatttttgttctccaatttccttgcattaaactcattaaacacttgacatagaacaaatgtattaaatatcaatgtgtcatttacctttaa |
30441631 |
T |
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| Q |
205 |
tgtc |
208 |
Q |
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|||| |
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| T |
30441630 |
tgtc |
30441627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 67 - 208
Target Start/End: Complemental strand, 29475961 - 29475818
Alignment:
| Q |
67 |
accaataattcccaaaaacaacttgctcttgaatattccttcaaagacattctttttctccaatttccttgcattaaactcattaaacacttgacataga |
166 |
Q |
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||||||| ||||| ||||||||||||| || |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29475961 |
accaatatttccctaaaacaacttgcttttacatatcccttcaaaaacattctttttctccaatttccttgcattaaactcattaaacacttgacataga |
29475862 |
T |
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| Q |
167 |
acaaatgtatta--aaaatcaatgtgtcatttacctttgatgtc |
208 |
Q |
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| T |
29475861 |
gcaaatgtattaagaatatcaatatgtcatttacctttgatgtc |
29475818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 19592636 - 19592698
Alignment:
| Q |
140 |
ttaaactcattaaacacttgacatagaacaaatgtattaaaaatcaatgtgtcatttaccttt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
19592636 |
ttaaactcattaaacacttgacatagaacaaatgtattaaatatcaatgtgtcgtttaccttt |
19592698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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