View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_high_75 (Length: 213)

Name: NF8061_high_75
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_high_75
NF8061_high_75
[»] chr8 (2 HSPs)
chr8 (17-198)||(34076063-34076245)
chr8 (47-126)||(4940655-4940733)
[»] chr2 (2 HSPs)
chr2 (54-150)||(6372708-6372806)
chr2 (74-128)||(18891589-18891643)
[»] chr1 (2 HSPs)
chr1 (42-174)||(36722068-36722200)
chr1 (17-126)||(24158157-24158267)
[»] chr5 (1 HSPs)
chr5 (73-150)||(35875519-35875596)
[»] chr3 (2 HSPs)
chr3 (44-114)||(39915209-39915279)
chr3 (76-114)||(33752778-33752816)
[»] chr7 (2 HSPs)
chr7 (42-126)||(491073-491157)
chr7 (47-126)||(47488506-47488585)
[»] chr4 (4 HSPs)
chr4 (41-164)||(11895972-11896095)
chr4 (54-125)||(40575201-40575273)
chr4 (59-106)||(25582700-25582747)
chr4 (58-135)||(32295577-32295654)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 34076245 - 34076063
Alignment:
Q  17 tccgagacatgcaatcgcaagaaa-gtcattaaaaatgagacattgaagttctccaagaggagtctcaataacatgtaaatcaaagaagtctaaagataa 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34076245 tccgagacatgcaatcgcaagaaatgtcattaaaaatgagacattgaagctctccaagaggagtctcaataacatgtaaatcaaagaagtccaaagataa 34076146  T
Q  116 actaaaattagttattcaatcagccgatctgtttctgtcacgctatgtacggctgatttagactttattttatatttggaatt 198  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  34076145 actaaaattaattattcaatcagccgatctgtttctgtcacgctatgtatggctgatttagactttattttatatttgaaatt 34076063  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 4940733 - 4940655
Alignment:
Q  47 aaaaatgagacattgaagttctccaagaggagtctcaataacatgtaaatcaaagaagtctaaagataaactaaaattag 126  Q
    |||||||||||||||||| |||  |  || |||||| |||||||||||||||||  || ||||||||| |||||||||||    
T  4940733 aaaaatgagacattgaagctctttagaagaagtctccataacatgtaaatcaaa-tagactaaagatagactaaaattag 4940655  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 6372806 - 6372708
Alignment:
Q  54 agacattgaagttctccaagaggag--tctcaataacatgtaaatcaaagaagtctaaagataaactaaaattagttattcaatcagccgatctgtttc 150  Q
    ||||||||||| |||| ||||||||  ||||||||| |||||||||||||||||| ||||||| ||||||||||| ||  |||||||||||| ||||||    
T  6372806 agacattgaagctctctaagaggagagtctcaataatatgtaaatcaaagaagtccaaagatacactaaaattagctagccaatcagccgatttgtttc 6372708  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 18891589 - 18891643
Alignment:
Q  74 aggagtctcaataacatgtaaatcaaagaagtctaaagataaactaaaattagtt 128  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||  |||||||||    
T  18891589 aggaatctcagtaacatgtaaatcaaaggagtctaaagataaacataaattagtt 18891643  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 42 - 174
Target Start/End: Complemental strand, 36722200 - 36722068
Alignment:
Q  42 tcattaaaaatgagacattgaagttctccaagaggagtctcaataacatgtaaatcaaagaagtctaaagataaactaaaattagttattcaatcagccg 141  Q
    |||| ||||| |||||||||||  |||| | ||||||||||||||||||||||||||||  |||| ||||||  ||||||||| | ||  || || ||||    
T  36722200 tcataaaaaaggagacattgaaactctctaggaggagtctcaataacatgtaaatcaaaagagtccaaagattgactaaaatttgctagccattccgccg 36722101  T
Q  142 atctgtttctgtcacgctatgtacggctgattt 174  Q
    || ||||||| |||||| ||||| || ||||||    
T  36722100 atttgtttctttcacgccatgtatggttgattt 36722068  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 24158267 - 24158157
Alignment:
Q  17 tccgagacatgcaatcgcaagaaa-gtcattaaaaatgagacattgaagttctccaagaggagtctcaataacatgtaaatcaaagaagtctaaagataa 115  Q
    |||||||||||||| ||  ||||| ||||| ||||| || || |||||| |||| ||||||||||||||| |  ||||||||||||  |||  ||||||     
T  24158267 tccgagacatgcaagcgtcagaaatgtcataaaaaaggaaacgttgaagctctctaagaggagtctcaatcatttgtaaatcaaaggtgtccgaagatag 24158168  T
Q  116 actaaaattag 126  Q
    |||||||||||    
T  24158167 actaaaattag 24158157  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 35875596 - 35875519
Alignment:
Q  73 gaggagtctcaataacatgtaaatcaaagaagtctaaagataaactaaaattagttattcaatcagccgatctgtttc 150  Q
    |||||||| |||||||||||| ||||||| |||||||||||| ||||||||| | ||  ||||| |||||||||||||    
T  35875596 gaggagtcacaataacatgtatatcaaaggagtctaaagatagactaaaatttgctagccaatccgccgatctgtttc 35875519  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 39915279 - 39915209
Alignment:
Q  44 attaaaaatgagacattgaagttctccaagaggagtctcaataacatgtaaatcaaagaagtctaaagata 114  Q
    |||||||| | |||||||||| |||| | ||| |||||||||||||||||| |||||| ||||||||||||    
T  39915279 attaaaaaggtgacattgaagctctctaggagaagtctcaataacatgtaattcaaaggagtctaaagata 39915209  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 33752816 - 33752778
Alignment:
Q  76 gagtctcaataacatgtaaatcaaagaagtctaaagata 114  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  33752816 gagtctcaataacatataaatcaaaggagtctaaagata 33752778  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 491157 - 491073
Alignment:
Q  42 tcattaaaaatgagacattgaagttctccaagaggagtctcaataacatgtaaatcaaagaagtctaaagataaactaaaattag 126  Q
    |||| ||||| ||||| |||||| |||| | ||||||||||||| | |||||||||||||  ||| ||||||| |||||||||||    
T  491157 tcataaaaaaggagacgttgaagctctctaggaggagtctcaatcatatgtaaatcaaaggtgtccaaagatagactaaaattag 491073  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 47488585 - 47488506
Alignment:
Q  47 aaaaatgagacattgaagttctccaagaggagtctcaataacatgtaaatcaaagaagtctaaagataaactaaaattag 126  Q
    ||||| |||||||| ||||||||   | ||||||||||||||||||||||||||| |||  ||||| | |||||||||||    
T  47488585 aaaaaggagacattcaagttctcttggtggagtctcaataacatgtaaatcaaaggagttcaaagagagactaaaattag 47488506  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 11895972 - 11896095
Alignment:
Q  41 gtcattaaaaatgagacattgaagttctccaagaggagtctcaataacatgtaaatcaaagaagtctaaagataaactaaaattagttattcaatcagcc 140  Q
    ||||| ||||| ||||| |||||| |||| ||||||||||||||| |  |||| |||||||  ||| ||||||| ||||||||||| ||  ||||| ||     
T  11895972 gtcatcaaaaaggagacgttgaagctctctaagaggagtctcaatcatgtgtagatcaaaggcgtccaaagatagactaaaattagctagccaatctgct 11896071  T
Q  141 gatctgtttctgtcacgctatgta 164  Q
    ||||| ||||  |||||| |||||    
T  11896072 gatctatttccttcacgccatgta 11896095  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 40575201 - 40575273
Alignment:
Q  54 agacattgaagttctccaagaggagtctcaataacatgtaaatcaaaga-agtctaaagataaactaaaatta 125  Q
    ||||||||||||| |  | || |||||| ||||||| |||||||||||| ||| |||||||||||||||||||    
T  40575201 agacattgaagttttttaggatgagtcttaataacaagtaaatcaaagagagtttaaagataaactaaaatta 40575273  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 25582700 - 25582747
Alignment:
Q  59 ttgaagttctccaagaggagtctcaataacatgtaaatcaaagaagtc 106  Q
    |||||| |||| | ||||||||||||||||||||||||||||| ||||    
T  25582700 ttgaagctctctaggaggagtctcaataacatgtaaatcaaaggagtc 25582747  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 32295577 - 32295654
Alignment:
Q  58 attgaagttctccaagaggagtctcaataacatgtaaatcaaagaagtctaaagataaactaaaattagttattcaat 135  Q
    ||||||| |||| | ||||||||| |||||||| |||||||||  | || ||||| | |||||||||||||| |||||    
T  32295577 attgaagctctctaggaggagtctaaataacatataaatcaaaagaatccaaagagagactaaaattagttagtcaat 32295654  T

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