View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_high_78 (Length: 206)

Name: NF8061_high_78
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_high_78
NF8061_high_78
[»] chr5 (3 HSPs)
chr5 (17-193)||(35252191-35252367)
chr5 (84-117)||(11596398-11596431)
chr5 (136-184)||(26205756-26205805)
[»] chr6 (4 HSPs)
chr6 (135-185)||(30781289-30781340)
chr6 (146-185)||(9024182-9024222)
chr6 (83-117)||(3209485-3209519)
chr6 (85-117)||(17341622-17341654)
[»] chr4 (8 HSPs)
chr4 (83-117)||(30621752-30621786)
chr4 (147-191)||(40224505-40224550)
chr4 (146-185)||(18513247-18513287)
chr4 (147-185)||(30103364-30103402)
chr4 (84-117)||(16184917-16184950)
chr4 (137-185)||(31243545-31243594)
chr4 (84-132)||(5654503-5654551)
chr4 (147-186)||(9988706-9988746)
[»] chr1 (5 HSPs)
chr1 (136-185)||(40747769-40747819)
chr1 (83-117)||(38078600-38078634)
chr1 (84-113)||(12455285-12455314)
chr1 (146-185)||(30847726-30847766)
chr1 (84-132)||(51410096-51410144)
[»] chr3 (3 HSPs)
chr3 (85-118)||(47132179-47132212)
chr3 (84-117)||(21478778-21478811)
chr3 (84-117)||(46191283-46191316)
[»] chr2 (3 HSPs)
chr2 (146-185)||(18570985-18571025)
chr2 (138-185)||(10535757-10535805)
chr2 (147-190)||(45000853-45000897)
[»] chr7 (4 HSPs)
chr7 (147-185)||(38134413-38134452)
chr7 (77-113)||(1415671-1415707)
chr7 (85-117)||(11272531-11272563)
chr7 (146-185)||(37775995-37776035)
[»] chr8 (3 HSPs)
chr8 (84-133)||(7616768-7616817)
chr8 (80-117)||(28819288-28819325)
chr8 (146-185)||(29198485-29198525)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 35252191 - 35252367
Alignment:
Q  17 attaaggtgattagtgttatttatacattgaaatgagcttgaagtgttgggaattttggatattgatctatgaagcacaaatactcctcggattaggcgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35252191 attaaggtgattagtgttatttatacattgaaatgagcttgtagtgttgggaattttggatattgatctatgaagcacatatactcctcggattaggcgt 35252290  T
Q  117 gcttaggtgtcggatatatgacaccaacatgacacatatgattacattaattatgtcattttctcaaatattattgg 193  Q
    | | ||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  35252291 gttcaggtgtcagatatatgacaccaacatgacacatatgattacattaactatgtaattttctcaaatattattgg 35252367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 11596398 - 11596431
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtg 117  Q
    ||||||||||||||||||||||||||||||||||    
T  11596398 ctatgaagcacaaatactcctcggattaggcgtg 11596431  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 26205756 - 26205805
Alignment:
Q  136 gacaccaacatgacacatatgattacatt-aattatgtcattttctcaaa 184  Q
    |||||||||| ||||| |||||||||| | ||||||||||||||||||||    
T  26205756 gacaccaacacgacacctatgattacactgaattatgtcattttctcaaa 26205805  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 30781289 - 30781340
Alignment:
Q  135 tgacaccaacatgacacatatgattaca-ttaattatgtcattttctcaaat 185  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  30781289 tgacaccgacatgacacctatgattacaattaattatgtcattttctcaaat 30781340  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 9024182 - 9024222
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  9024182 tgacacatatgattacattgaattatgtcattttctcaaat 9024222  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 3209519 - 3209485
Alignment:
Q  83 tctatgaagcacaaatactcctcggattaggcgtg 117  Q
    ||||||||||||||| |||||||||||||||||||    
T  3209519 tctatgaagcacaaacactcctcggattaggcgtg 3209485  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 17341622 - 17341654
Alignment:
Q  85 tatgaagcacaaatactcctcggattaggcgtg 117  Q
    ||||||||||||| |||||||||||||||||||    
T  17341622 tatgaagcacaaacactcctcggattaggcgtg 17341654  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 30621752 - 30621786
Alignment:
Q  83 tctatgaagcacaaatactcctcggattaggcgtg 117  Q
    |||||||||||||||||||||||||||||||||||    
T  30621752 tctatgaagcacaaatactcctcggattaggcgtg 30621786  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 40224505 - 40224550
Alignment:
Q  147 gacacatatgattacattaa-ttatgtcattttctcaaatattatt 191  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||    
T  40224505 gacacatatgattacattaaattatgtcattttctcacatattatt 40224550  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 18513247 - 18513287
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  18513247 tgacacatatgattacattgaattatgtcattttctcaaat 18513287  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 30103364 - 30103402
Alignment:
Q  147 gacacatatgattacattaattatgtcattttctcaaat 185  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  30103364 gacacatatgattacactaattatgtgattttctcaaat 30103402  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 16184950 - 16184917
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtg 117  Q
    |||||||||||||| |||||||||||||||||||    
T  16184950 ctatgaagcacaaacactcctcggattaggcgtg 16184917  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 31243545 - 31243594
Alignment:
Q  137 acaccaacatgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    ||||| ||||||||| |||||||||| | |||||||||||||||||||||    
T  31243545 acaccgacatgacacctatgattacactgaattatgtcattttctcaaat 31243594  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 5654503 - 5654551
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtgcttaggtgtcggata 132  Q
    ||||||||||||||||||| |||||||||||||  |  |||||||||||    
T  5654503 ctatgaagcacaaatactcttcggattaggcgtattccggtgtcggata 5654551  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 9988706 - 9988746
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaata 186  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  9988706 gacacatgtgattacattcaattatgtcattttctcaaata 9988746  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 40747769 - 40747819
Alignment:
Q  136 gacaccaacatgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||||||    
T  40747769 gacaccaacatgacacctataattacattgaattatgtcattttctcaaat 40747819  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 38078600 - 38078634
Alignment:
Q  83 tctatgaagcacaaatactcctcggattaggcgtg 117  Q
    |||||||||||| ||||||||||||||||||||||    
T  38078600 tctatgaagcacgaatactcctcggattaggcgtg 38078634  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 12455314 - 12455285
Alignment:
Q  84 ctatgaagcacaaatactcctcggattagg 113  Q
    ||||||||||||||||||||||||||||||    
T  12455314 ctatgaagcacaaatactcctcggattagg 12455285  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 30847726 - 30847766
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  30847726 tgacacatatgattacattgaattatgtcattttttcaaat 30847766  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 51410144 - 51410096
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtgcttaggtgtcggata 132  Q
    ||||||||||| ||||||||| ||||||||||||  | |||||||||||    
T  51410144 ctatgaagcacgaatactccttggattaggcgtgtctcggtgtcggata 51410096  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 47132212 - 47132179
Alignment:
Q  85 tatgaagcacaaatactcctcggattaggcgtgc 118  Q
    ||||||||||||||||||||||||||||||||||    
T  47132212 tatgaagcacaaatactcctcggattaggcgtgc 47132179  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 21478811 - 21478778
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtg 117  Q
    ||||||||||||||| ||||||||||||||||||    
T  21478811 ctatgaagcacaaatgctcctcggattaggcgtg 21478778  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 46191283 - 46191316
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtg 117  Q
    |||||||||||||||||| |||||||||||||||    
T  46191283 ctatgaagcacaaatacttctcggattaggcgtg 46191316  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 18571025 - 18570985
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  18571025 tgacacatatgattacattgaattatgtcattttctcaaat 18570985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 10535757 - 10535805
Alignment:
Q  138 caccaacatgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    |||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  10535757 caccaacacgacacttatgattacactgaattatgtcattttctcaaat 10535805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 45000853 - 45000897
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaatattat 190  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||    
T  45000853 gacacatatgattacattgaattgtgtcattttctcaaattttat 45000897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 38134413 - 38134452
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  38134413 gacacatatgattacattgaattatgtcattttctcaaat 38134452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 1415707 - 1415671
Alignment:
Q  77 tattgatctatgaagcacaaatactcctcggattagg 113  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  1415707 tattgatctttgaagcacaaatactcttcggattagg 1415671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 11272531 - 11272563
Alignment:
Q  85 tatgaagcacaaatactcctcggattaggcgtg 117  Q
    ||||||||||| |||||||||||||||||||||    
T  11272531 tatgaagcacagatactcctcggattaggcgtg 11272563  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 37776035 - 37775995
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  37776035 tgacacatgtgattacatttaattatgtcattttctcaaat 37775995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 7616768 - 7616817
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtgcttaggtgtcggatat 133  Q
    |||||||||||| |||||||| ||||||||||||   |||||||||||||    
T  7616768 ctatgaagcacatatactcctgggattaggcgtgtccaggtgtcggatat 7616817  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 28819325 - 28819288
Alignment:
Q  80 tgatctatgaagcacaaatactcctcggattaggcgtg 117  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  28819325 tgatctatgaagcacatatactcctcggattagccgtg 28819288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 29198485 - 29198525
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  29198485 tgacgcatatgattacattgaattatgtcattttctcaaat 29198525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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