View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_10 (Length: 602)
Name: NF8061_low_10
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 260 - 589
Target Start/End: Complemental strand, 41082090 - 41081760
Alignment:
| Q |
260 |
ccacctacatgtaaccctaactactgactttttaggccaactagagaattttcacgcgtaaactacggagactaatcatattgaataattgagactcttt |
359 |
Q |
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| T |
41082090 |
ccacctacatgtaaccctaactactgactttttaggccaactagagaattttcacgcgtaaactaaggagactaatcatattgaataattgagactcttt |
41081991 |
T |
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| Q |
360 |
caatcgacgtttttccatgcacaccagtcggagattgaacctccactatgttggtatgtcaggtatcagttagaagttccacattagtggtgttcaatct |
459 |
Q |
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| T |
41081990 |
caaccgacgtttttccatgcacaccagtcggagattgaacctccactatgttggtatgtcaggtatcagttagaagttccacattagtggtgttcaatct |
41081891 |
T |
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| Q |
460 |
cacttatgtggttgctcttatctcaatgtgatgatctccggtattttaggacttcctcatgagtcatgaccttacacaccacatgtttcagataattaac |
559 |
Q |
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| T |
41081890 |
cacttatgtggttgctcttatctcaatgtgatgatctccggtattttaggacttcctcatgagtcatgaccttacacaccacatgtttcagataattaac |
41081791 |
T |
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| Q |
560 |
tatc-aatgacttgtgacatagcatataatt |
589 |
Q |
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| T |
41081790 |
tatcaaatgacttgtgtcatagcatataatt |
41081760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 41082333 - 41082151
Alignment:
| Q |
17 |
attctctattaaatgtaaataaccatacagggcaagctactacctatttatggagcatagtgtctttattttttgctttaaaattctatttcaacttcaa |
116 |
Q |
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| T |
41082333 |
attctctattaaatgtaaataaccatacagggcaagctactacctatttatggagcatagtgtctttattttttgctttaaaattctatttcaacttcaa |
41082234 |
T |
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| Q |
117 |
caatttctttcttacagcttaaactagctggcctattaaccaatgtctggctcatttagtacaattgttacaagaatatcagc |
199 |
Q |
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| T |
41082233 |
caatttctttcttacagcttaaactagctggcctattaaccaatgtctggctcatttagtacaattgttacaagaatatcagc |
41082151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 507
Target Start/End: Original strand, 24076665 - 24076706
Alignment:
| Q |
466 |
tgtggttgctcttatctcaatgtgatgatctccggtatttta |
507 |
Q |
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| T |
24076665 |
tgtggttgatcttaacacaatgtgatgatctccggtatttta |
24076706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 38804040 - 38803999
Alignment:
| Q |
450 |
tgttcaatctcacttatgtggttgctcttatctcaatgtgat |
491 |
Q |
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| T |
38804040 |
tgttcaacctcacttgtgtggttgctcttaactcaatgtgat |
38803999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 490
Target Start/End: Original strand, 11442959 - 11443003
Alignment:
| Q |
446 |
gtggtgttcaatctcacttatgtggttgctcttatctcaatgtga |
490 |
Q |
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| T |
11442959 |
gtggtgtccaatctcacttgtgtggttgctcttagcccaatgtga |
11443003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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