View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_11 (Length: 583)
Name: NF8061_low_11
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Complemental strand, 3710908 - 3710346
Alignment:
| Q |
18 |
ttagggtcacccgacccgtttatcgattgggccttgacttagtatggaacaatttcctatgaagccgttggttgacaatgtaaggtgatggcttgttttt |
117 |
Q |
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| T |
3710908 |
ttagggtgacccgacccgtttatcgattgggccttgatttagtatggaacaatttcctatgaagccgttggttgacaatgtaaggtgatggcttgttttt |
3710809 |
T |
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| Q |
118 |
ccgttaaacgttggaccgaaagtgtgttgtatctctacgacctttggggtcccccttcaatgtattagtgtaattgagggagtcaaatgatggctcatag |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3710808 |
tcgtcaaacgttggaccgaaagtgtgttgtatctctacgacctttggggtccctcttcaatgtattagtgtagttgagggagtcaaatgatggctcatag |
3710709 |
T |
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| Q |
218 |
caggaccaagtctttgaaataaaagcatgttgtatatgtgcc-tttgggtccagtatccttgataatgaaaagattcgttcttggaggccttagggggtc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3710708 |
caggaccaagtctttgaaataaaagcatgttgtatatgtgccctttgggtccagtatccttgataatgaaaaaattcgttcttggaggccttagggggtc |
3710609 |
T |
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| Q |
317 |
gaatgttgactaagaagagaggtagattgttaatttatgtagatctaaccttattgttgcgtgtcaatgattccaaaaaacgggtactacacatcttctt |
416 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3710608 |
aaacgttgactaagaagagaggtagattgttaatttatgtagatctaaccttattgttgcgtgtcaatgattccaaaaaacgggtactacacatcttctt |
3710509 |
T |
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| Q |
417 |
gataaaattgtctgaaatgccttctaggtcgaattgtaggggtcggatggtccgaataccatttttgtgggtcgttgatagagtttattcttgggaacac |
516 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3710508 |
gataaaattgtctgaaatgccttctaggtcgacttgtaggggtcggatggtccgaataccatttttgtgggtcgttgatagagtttattcttgggaacac |
3710409 |
T |
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| Q |
517 |
gctcgaatgcatatgattccctttgttaggatgtcgatgaatgtattggtgtacctttgtcag |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3710408 |
gctcgaatgcatatgattccctttgttaggatgtcgatgaatgtattggtgtacctttgtcag |
3710346 |
T |
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