View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_13 (Length: 545)
Name: NF8061_low_13
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 34 - 487
Target Start/End: Original strand, 39783509 - 39783963
Alignment:
| Q |
34 |
ggtcgaaagcagaatttgatcaatgaaactgaacaaaatgttgtaatagagtttttggcccatgtttcttgtccacttcaccaaagtcacatcttcggac |
133 |
Q |
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| T |
39783509 |
ggtcgaaagcagaatttgatcaatgaaactgaacaaaatgttgtaatagagtttttggcccatgtttcttgtccacttcaccaaagtcacatcttcggac |
39783608 |
T |
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| Q |
134 |
gtaattctacgctaccaatnnnnnnn-tgacatgtaaaaaagctccaaactaggttgtagggaaaaatcccgaaacttgtgaatttgaaggactaaattc |
232 |
Q |
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| T |
39783609 |
gtaattctacgctaccaataaaaaaaatgacatgtaaaaaagctccaaactaggttgtggggaaaaatcccgaaacttgtgaatttgaaggactaaattc |
39783708 |
T |
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| Q |
233 |
tatattttaaaatggaaaaattaaaattgttgtttggttgaattaagagtagaaagtaggtttaagcattttatattttgatgaaggaggaaactttgat |
332 |
Q |
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| T |
39783709 |
tatattttaaaatggaaaaattaaaattgttgtttggttgaattaagagtagaaagtaggtttaagcattttatattttgatgaaggaggaaactttgat |
39783808 |
T |
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| Q |
333 |
aaaaagatcgacaggctaacccattgatccgttaatttggctagagtaagttgaggtttcgaacattacgactcaagatagtccactccgcttaaccctt |
432 |
Q |
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| T |
39783809 |
aaaaagatcgacaggctaacccattgatccgttaatttggctagagtaagttgaggttttgaacattacgactcaagattgtccactccgcttaaccctt |
39783908 |
T |
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| Q |
433 |
taaaaatgtgggaaggtgacaagggtttacatgtccggtcaatttaacaaatatc |
487 |
Q |
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| T |
39783909 |
taaaaatgtgggaaggtgacaagggtttacatgtcctgtcaatttaacaaatatc |
39783963 |
T |
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