View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_14 (Length: 534)
Name: NF8061_low_14
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 30386072 - 30385562
Alignment:
| Q |
1 |
ccaaaattaaaactctccatagaacgaataagctcattaagcacatgcacatctttggaatttgaattggacaaaggtgacataggtggtgaatttgaag |
100 |
Q |
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| T |
30386072 |
ccaaaattaaaactctccatagaacgaataagctcattaagcacatgcacatctttggaatttgaattggacaaaggtgacaaaggtggtgaatttgaag |
30385973 |
T |
|
| Q |
101 |
aagaaaaatggggcccacttaacaaagtagaagtgggtgaagaagaatttgagcagcaatgacagaaagaacaacannnnnnnnnnnnnnnnngaggagg |
200 |
Q |
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| T |
30385972 |
aagaaaaatggggcccacttaacaaagtagaagtgggtgaagaagaatttgaacagcaatgacagaaagaacaacattttttgttgtttttttgaggagg |
30385873 |
T |
|
| Q |
201 |
tgtaggagaaggagaaaggggtggtaaaagcaaaactctaagttgacgaggtgtatgagcnnnnnnncaaatttttcgcttacaatttttaccatcttta |
300 |
Q |
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| T |
30385872 |
tgtaggagaaggagaaaggggtggtaaaagcaaaactctaagttgacgaggtgtatgagcaaaaaaacaaatttttcgcttacaatttttaccatcttta |
30385773 |
T |
|
| Q |
301 |
caagcttcagttctataccttgaagggtgcaaccagcactcaaaaactccgtgggagaattcacaggcttcaccgcggtcgcagtttccgcggcggtaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30385772 |
caagcttcagttctataccttgaagggtgcaaccagcactcaaaaactccgtgggagaattcacaggcttcaccgcggtcgcagtttccgcggcggtaat |
30385673 |
T |
|
| Q |
401 |
caggacacacctcaccggagtactgatacctgagggggtcacgacggcgtgccttttcgcctggatgggcgaaagggcagtcagtccagtcgtggctccg |
500 |
Q |
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| T |
30385672 |
caggacacacctcaccggagtactgatacctgagggggtcacgacggcgtgccttttcgcctggatgggcgaaagggcagtcagtccagtcgtggctccg |
30385573 |
T |
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| Q |
501 |
gctacgggtgc |
511 |
Q |
| |
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| T |
30385572 |
gctacgggtgc |
30385562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 511
Target Start/End: Original strand, 38748131 - 38748374
Alignment:
| Q |
268 |
caaatttttcgcttacaatttttaccatctttacaagcttcagttctataccttgaagggtgcaaccagcactcaaaaactccgtgggagaattcacagg |
367 |
Q |
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|||| ||||| |||||| |||||||||||||| || ||||||||||| || || | ||| || | |||||| |||||||| || || | ||||||||| | |
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| T |
38748131 |
caaacttttctcttacagtttttaccatctttgcatgcttcagttctgtatctagcaggatgaagccagcattcaaaaacgccatgagcgaattcacaag |
38748230 |
T |
|
| Q |
368 |
cttcaccgcggtcgcagtttccgcggcggtaatcaggacacacctcaccggagtactgatacctgagggggtcacgacggcgtgccttttcgcctggatg |
467 |
Q |
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| T |
38748231 |
tatcaccgcggttacagccaccgcggcgatactcagggcaaactgtccctgagtaatgaaaccgccgtggatcacggcggcgagctttctcaccggggtg |
38748330 |
T |
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| Q |
468 |
ggcgaaagggcagtcagtccagtcgtggctccggctacgggtgc |
511 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||| |||| |
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| T |
38748331 |
agcgaatggacagtcagtccagtcgtggctccggctacgagtgc |
38748374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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