View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_low_18 (Length: 508)

Name: NF8061_low_18
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_low_18
NF8061_low_18
[»] chr3 (13 HSPs)
chr3 (70-493)||(3618421-3618844)
chr3 (9-62)||(35534481-35534534)
chr3 (9-65)||(36404259-36404315)
chr3 (9-65)||(37115924-37115980)
chr3 (12-61)||(45602984-45603033)
chr3 (12-60)||(39391958-39392006)
chr3 (9-72)||(29360471-29360534)
chr3 (9-64)||(46487267-46487321)
chr3 (23-65)||(14201713-14201755)
chr3 (20-65)||(52742348-52742393)
chr3 (12-49)||(16353529-16353566)
chr3 (10-58)||(48944143-48944191)
chr3 (9-47)||(3618377-3618415)
[»] chr8 (18 HSPs)
chr8 (9-65)||(22798537-22798593)
chr8 (9-65)||(4234174-4234230)
chr8 (9-65)||(16655974-16656030)
chr8 (9-65)||(23403594-23403650)
chr8 (9-65)||(30204685-30204741)
chr8 (12-65)||(23275567-23275620)
chr8 (9-61)||(3001414-3001466)
chr8 (9-61)||(4623887-4623939)
chr8 (20-61)||(4414226-4414267)
chr8 (12-65)||(14842304-14842357)
chr8 (9-65)||(37629998-37630054)
chr8 (10-61)||(21567707-21567758)
chr8 (9-70)||(36470172-36470234)
chr8 (18-60)||(45310061-45310103)
chr8 (12-65)||(29958554-29958607)
chr8 (9-58)||(39436844-39436893)
chr8 (20-58)||(36046577-36046614)
chr8 (23-60)||(41787497-41787534)
[»] chr5 (17 HSPs)
chr5 (9-65)||(3729370-3729426)
chr5 (20-73)||(9793780-9793833)
chr5 (9-65)||(34766921-34766977)
chr5 (9-60)||(39508353-39508404)
chr5 (9-58)||(21020686-21020735)
chr5 (9-61)||(8159107-8159159)
chr5 (9-57)||(21583853-21583901)
chr5 (9-65)||(25081763-25081819)
chr5 (9-65)||(25139732-25139788)
chr5 (18-65)||(41929337-41929384)
chr5 (9-61)||(2068963-2069013)
chr5 (23-71)||(3711172-3711220)
chr5 (20-59)||(9793683-9793722)
chr5 (18-65)||(9913798-9913845)
chr5 (17-63)||(20815668-20815714)
chr5 (17-65)||(20736203-20736251)
chr5 (33-65)||(38451089-38451121)
[»] chr2 (19 HSPs)
chr2 (9-65)||(37140171-37140227)
chr2 (9-63)||(5958964-5959018)
chr2 (9-63)||(21423363-21423417)
chr2 (12-64)||(24475972-24476024)
chr2 (9-65)||(37060116-37060172)
chr2 (9-65)||(13274197-13274253)
chr2 (12-60)||(30393632-30393680)
chr2 (9-65)||(30609723-30609779)
chr2 (9-61)||(37802873-37802925)
chr2 (9-62)||(6974554-6974607)
chr2 (9-57)||(15070427-15070475)
chr2 (9-65)||(27004445-27004501)
chr2 (9-64)||(28107525-28107580)
chr2 (9-55)||(4382213-4382259)
chr2 (18-60)||(10217401-10217443)
chr2 (17-60)||(22194328-22194371)
chr2 (9-52)||(27404652-27404695)
chr2 (20-65)||(5807368-5807412)
chr2 (9-55)||(43022918-43022964)
[»] chr1 (14 HSPs)
chr1 (9-65)||(41998916-41998972)
chr1 (12-64)||(39001944-39001996)
chr1 (10-65)||(1585856-1585911)
chr1 (20-65)||(6750358-6750403)
chr1 (9-60)||(794914-794965)
chr1 (9-63)||(26653977-26654031)
chr1 (17-62)||(3695405-3695450)
chr1 (11-64)||(11121854-11121907)
chr1 (9-58)||(18808781-18808830)
chr1 (9-64)||(4792605-4792660)
chr1 (9-63)||(571645-571699)
chr1 (11-60)||(9224863-9224912)
chr1 (9-65)||(24909545-24909601)
chr1 (18-65)||(44272403-44272451)
[»] scaffold0306 (1 HSPs)
scaffold0306 (9-63)||(13093-13147)
[»] scaffold0152 (1 HSPs)
scaffold0152 (9-63)||(22180-22234)
[»] chr4 (12 HSPs)
chr4 (10-59)||(12701040-12701089)
chr4 (9-65)||(35929703-35929759)
chr4 (9-65)||(53584603-53584659)
chr4 (9-60)||(56100175-56100226)
chr4 (9-59)||(21555382-21555432)
chr4 (17-61)||(19598367-19598411)
chr4 (9-64)||(36609450-36609506)
chr4 (10-65)||(44243734-44243789)
chr4 (9-65)||(23249466-23249522)
chr4 (9-61)||(35749385-35749437)
chr4 (20-60)||(41842789-41842829)
chr4 (9-50)||(827840-827881)
[»] scaffold0532 (1 HSPs)
scaffold0532 (9-60)||(11320-11371)
[»] chr6 (8 HSPs)
chr6 (9-58)||(2814927-2814976)
chr6 (9-65)||(1067796-1067852)
chr6 (9-65)||(24640389-24640445)
chr6 (9-65)||(26394026-26394082)
chr6 (9-60)||(444522-444573)
chr6 (19-65)||(12324168-12324214)
chr6 (20-65)||(6200210-6200255)
chr6 (9-61)||(23774069-23774121)
[»] scaffold0302 (1 HSPs)
scaffold0302 (9-65)||(18540-18596)
[»] scaffold0025 (1 HSPs)
scaffold0025 (10-65)||(67868-67923)
[»] scaffold1248 (1 HSPs)
scaffold1248 (9-59)||(970-1020)
[»] scaffold0952 (1 HSPs)
scaffold0952 (9-59)||(1293-1343)
[»] chr7 (6 HSPs)
chr7 (9-74)||(41326028-41326093)
chr7 (9-61)||(8163680-8163732)
chr7 (9-61)||(40337103-40337155)
chr7 (9-61)||(2362419-2362471)
chr7 (12-59)||(35589447-35589494)
chr7 (23-60)||(31637707-31637744)
[»] scaffold0140 (1 HSPs)
scaffold0140 (9-64)||(21473-21528)
[»] scaffold0121 (1 HSPs)
scaffold0121 (9-64)||(37440-37495)


Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 70 - 493
Target Start/End: Original strand, 3618421 - 3618844
Alignment:
Q  70 ttttaggaaaggtgatattagctaagaacaaatttggacagagattttctaatcaaaagcatggcatttagatttctgaagtaacaagtaaagaatgatt 169  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3618421 ttttaggaaaggtgatagtagctaagaacaaatttgaacagagattttctaatcaaaagcatggcatttagatttctgaagtaacaagtaaagcatgatt 3618520  T
Q  170 tgaaagttgtatagctcaacttacggtcaagaaaacaattgccaccggaacaagaaggacatgctattttggaaagaacagatcatagtttgatggaaaa 269  Q
    ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  3618521 tgaaagttgtatagctcaacttatggtcaagaaaacaattgccactagaacaagaacgacgtgctattttggaaagaacagatcatagtttgatggaaaa 3618620  T
Q  270 ctggttttgaactcataagaacaagtttcaatctacagtttctatgattaagccttgtgcatgcattatctttccatagaaacaaatagtgcatatgatt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3618621 ctggttttgaactcataagaacaagtttcaatctacagtttctatgattaagccttgtgcatgcattatctttccatagaaacaaatagtgcatatgatt 3618720  T
Q  370 ctgaaatgcattagccaaacttttgcaaaaaatattgtctggtttcatgaatgtaaacagcatgttcaaccagtgtcctcaatcaagcatcactaaaaat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3618721 ctgaaatgcattagccaaacttttgcaaaaaatattgtctggtttcatgaatgtaaacagcatgttcaaccagtgtcgtcaatcaagcatcactaaaaat 3618820  T
Q  470 ggtagttttttaaaacctatgaag 493  Q
    |||||||| |||||||||||||||    
T  3618821 ggtagtttgttaaaacctatgaag 3618844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 35534534 - 35534481
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagg 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35534534 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactattttaaacagg 35534481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 36404259 - 36404315
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36404259 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaagaggctc 36404315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 37115924 - 37115980
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37115924 gagaagatgacttatatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 37115980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 45603033 - 45602984
Alignment:
Q  12 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45603033 aagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 45602984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 39392006 - 39391958
Alignment:
Q  12 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39392006 aagaaaacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 39391958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 29360534 - 29360471
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctcgtaattt 72  Q
    ||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||| ||||||    
T  29360534 gagaagaggacttgtatatttcaaaaactgaaaagaaaaattgtttcaaacaggctcttaattt 29360471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 46487321 - 46487267
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 64  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  46487321 gagaagaagacttatatatttcaaaaactgaaaa-aaaaactatttcaaacaggct 46487267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 14201755 - 14201713
Alignment:
Q  23 tatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14201755 tatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 14201713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 52742393 - 52742348
Alignment:
Q  20 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  52742393 ttgtatatttcaaaaactggaaacaaaaactatttcaaacaggctc 52742348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 16353529 - 16353566
Alignment:
Q  12 aagaagacttgtatatttcaaaaactgaaaacaaaaac 49  Q
    |||| |||||||||||||||||||||||||||||||||    
T  16353529 aagaggacttgtatatttcaaaaactgaaaacaaaaac 16353566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 48944143 - 48944191
Alignment:
Q  10 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 58  Q
    |||||| |||||||||||||||||| || |||| |||||||||||||||    
T  48944143 agaagaggacttgtatatttcaaaagctaaaaagaaaaactatttcaaa 48944191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 3618377 - 3618415
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaa 47  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  3618377 gagaagaaaacttgtatatttcagaaactgaaaacaaaa 3618415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 22798593 - 22798537
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22798593 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 22798537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 4234230 - 4234174
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4234230 gagaagatgacttgtatatttcaaaaactgaaaacaaaaactattttaaacaggctc 4234174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 16656030 - 16655974
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  16656030 gagaagaaggcttgtatattttaaaaactgaaaacaaaaactatttcaaacaggctc 16655974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 23403650 - 23403594
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23403650 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaataggctc 23403594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 30204685 - 30204741
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30204685 gagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaagaggctc 30204741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 23275567 - 23275620
Alignment:
Q  12 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23275567 aagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaagaggctc 23275620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 3001414 - 3001466
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  3001414 gagaagaggacttgtatatttcaaaaactgaaaataaaaactatttcaaacag 3001466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 4623887 - 4623939
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  4623887 gagaagatgacttatatatttcaaaaactgaaaacaaaaactatttcaaacag 4623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 4414267 - 4414226
Alignment:
Q  20 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4414267 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 4414226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 14842357 - 14842304
Alignment:
Q  12 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  14842357 aagaggacttgtatatttcaaaaactgaaaacaaaaattatttcaaacatgctc 14842304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 37630054 - 37629998
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| | ||| ||||||| |||||||||||||||||||||||||||||||||||    
T  37630054 gagaagagggcttatatatttaaaaaactgaaaacaaaaactatttcaaacaggctc 37629998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 21567758 - 21567707
Alignment:
Q  10 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    |||||| || ||||||||||| ||||||||||||||||||||||||||||||    
T  21567758 agaagaggatttgtatatttctaaaactgaaaacaaaaactatttcaaacag 21567707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 36470172 - 36470234
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactg-aaaacaaaaactatttcaaacaggctcgtaat 70  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||    
T  36470172 gagaagatgacttgtatatttcaaaaactgaaaaacaaaaattatttcaaagaggctcttaat 36470234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 45310061 - 45310103
Alignment:
Q  18 acttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  45310061 acttgtatatttcaaaaattgaaaacaaaaactatttcaaaca 45310103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 29958554 - 29958607
Alignment:
Q  12 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  29958554 aagatgacttgtatatttcaaaaactgaaaacaaaaattattttaaagaggctc 29958607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 39436893 - 39436844
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 58  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  39436893 gagaagaggacttgtatatttcaaaaattgaaaacaaaaattatttcaaa 39436844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 36046577 - 36046614
Alignment:
Q  20 ttgtatatttcaaaaactgaaaacaaaaactatttcaaa 58  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  36046577 ttgtatatttcaaaaactg-aaacaaaaactatttcaaa 36046614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 41787534 - 41787497
Alignment:
Q  23 tatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  41787534 tatattttaaaaactgaaaacaaaaactattttaaaca 41787497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 3729370 - 3729426
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3729370 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 3729426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 9793780 - 9793833
Alignment:
Q  20 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctcgtaatttt 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9793780 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctcttaatttt 9793833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 34766921 - 34766977
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34766921 gagaagaggacttgtatatttcaaaaattgaaaacaaaaactatttcaaacaggctc 34766977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 39508353 - 39508404
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39508353 gagaaaaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 39508404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 21020735 - 21020686
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 58  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21020735 gagaagaagacttatatatttcaaaaactgaaaacaaaaactatttcaaa 21020686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 8159107 - 8159159
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  8159107 gagaagaggacttgtatatttcaaaaattgaaaacaaaaactatttcaaacag 8159159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 21583901 - 21583853
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaa 57  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21583901 gagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaa 21583853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 25081819 - 25081763
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||    
T  25081819 gagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctc 25081763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 25139788 - 25139732
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||    
T  25139788 gagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctc 25139732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 41929384 - 41929337
Alignment:
Q  18 acttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41929384 acttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 41929337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 2069013 - 2068963
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  2069013 gagaagaagactt--atatttcaaaaactgaaaacaaaaactatttcaaacag 2068963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 3711220 - 3711172
Alignment:
Q  23 tatatttcaaaaactgaaaacaaaaactatttcaaacaggctcgtaatt 71  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||    
T  3711220 tatatttcaaaaactgaaaacaaaaactatttcaaacatgctcttaatt 3711172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 9793683 - 9793722
Alignment:
Q  20 ttgtatatttcaaaaactgaaaacaaaaactatttcaaac 59  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9793683 ttgtatatttcaaaaactgaaaacaaaaactatttcaaac 9793722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 9913845 - 9913798
Alignment:
Q  18 acttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  9913845 acttgtatatttcaaaaactaaaaacaaaaactatttcaaacatgctc 9913798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 20815714 - 20815668
Alignment:
Q  17 gacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 63  Q
    ||||||||||||| |||||||||||||||||||||||| ||| ||||    
T  20815714 gacttgtatattttaaaaactgaaaacaaaaactattttaaataggc 20815668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 20736203 - 20736251
Alignment:
Q  17 gacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||| ||||    
T  20736203 gacttatatttttcaaaaattgaaaacaaaaactatttcaaacaagctc 20736251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 38451089 - 38451121
Alignment:
Q  33 aaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||||||||||||||||||||||||||||||||    
T  38451089 aaactgaaaacaaaaactatttcaaacaggctc 38451121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 37140171 - 37140227
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37140171 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 37140227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 5959018 - 5958964
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 63  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5959018 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 5958964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 21423417 - 21423363
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 63  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21423417 gagatgaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 21423363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 24475972 - 24476024
Alignment:
Q  12 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 64  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24475972 aagaagatttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 24476024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 37060116 - 37060172
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  37060116 gagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 37060172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 13274253 - 13274197
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  13274253 gagaagaggacttgtatatttcaaaaattaaaaacaaaaactatttcaaacaggctc 13274197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 30393632 - 30393680
Alignment:
Q  12 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30393632 aagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 30393680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 30609723 - 30609779
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||    
T  30609723 gagaagaagacttgtatatttcaataactgaaaacaaaaacgatttcaaacgggctc 30609779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 37802873 - 37802925
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  37802873 gagaagaagacttgtatatttcaaaaatttaaaacaaaaactatttcaaacag 37802925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 6974554 - 6974607
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagg 62  Q
    |||||||  |||| ||||||||||||||||||||||||||||||||||||||||    
T  6974554 gagaagagcacttatatatttcaaaaactgaaaacaaaaactatttcaaacagg 6974607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 15070427 - 15070475
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaa 57  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||    
T  15070427 gagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaa 15070475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 27004501 - 27004445
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||    
T  27004501 gagaagaggacttatatatttcaaaaattgaaaacaaaaactatttcaaacatgctc 27004445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 28107525 - 28107580
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 64  Q
    ||||||| || ||||||||||||||||||||||||||||| | |||||||||||||    
T  28107525 gagaagaggatttgtatatttcaaaaactgaaaacaaaaattgtttcaaacaggct 28107580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 4382259 - 4382213
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttc 55  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||    
T  4382259 gagaagagaacttgtatatttcaaaaactgaaaacaaaaactatttc 4382213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 10217401 - 10217443
Alignment:
Q  18 acttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  10217401 acttgtatatttcaaaaactgaaaataaaaactatttcaaaca 10217443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 22194328 - 22194371
Alignment:
Q  17 gacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  22194328 gacttgtatatttcaaaaaccaaaaacaaaaactatttcaaaca 22194371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 27404652 - 27404695
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactat 52  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  27404652 gagaagaggacttgtatatttcaaaaactaaaaacaaaaactat 27404695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 5807368 - 5807412
Alignment:
Q  20 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  5807368 ttgtatatttcaaaaactg-aaacaaaaactatttcaaacatgctc 5807412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 43022918 - 43022964
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttc 55  Q
    ||||||| ||||||||||||| ||||||| |||||||||| ||||||    
T  43022918 gagaagaggacttgtatattttaaaaactaaaaacaaaaattatttc 43022964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 41998916 - 41998972
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41998916 gagaagaagacttgtatatttcaaaaaatgaaaacaaaaactatttcaaacaggctc 41998972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 39001996 - 39001944
Alignment:
Q  12 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39001996 aagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 39001944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 1585911 - 1585856
Alignment:
Q  10 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  1585911 agaagaagacttgtatatttcaaaaactaaaaacataaactatttcaaacaggctc 1585856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 6750358 - 6750403
Alignment:
Q  20 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6750358 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 6750403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 794965 - 794914
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  794965 gagaagaagacctgtatatttcaaaaactgaaaacaaaaaatatttcaaaca 794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 26653977 - 26654031
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 63  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||    
T  26653977 gagaagaggacctgtatatttcaaaaattgaaaacaaaaactatttcaaacaggc 26654031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 3695450 - 3695405
Alignment:
Q  17 gacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagg 62  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  3695450 gacttgtatatttcaaaaaccgaaaacaaaaactatttcaaacagg 3695405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 11121907 - 11121854
Alignment:
Q  11 gaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 64  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||||||    
T  11121907 gaagatgacttgtatatttcaaaaactgaaaacaaaaactattataaacaggct 11121854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 18808830 - 18808781
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 58  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  18808830 gagaagaagacttgtatatttcataaactgaaaacaaaaattatttcaaa 18808781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 4792605 - 4792660
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 64  Q
    |||||||  |||||||||||||||||||| |||||||||||||||| |||||||||    
T  4792605 gagaagagaacttgtatatttcaaaaactaaaaacaaaaactattttaaacaggct 4792660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 571699 - 571645
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 63  Q
    ||||||| ||| | |||||||||||||||||||||||||||||||||||| ||||    
T  571699 gagaagaggacgtatatatttcaaaaactgaaaacaaaaactatttcaaagaggc 571645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 9224863 - 9224912
Alignment:
Q  11 gaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    |||||| | |||| ||||||||||||||||||||||||||||||||||||    
T  9224863 gaagaaaatttgtgtatttcaaaaactgaaaacaaaaactatttcaaaca 9224912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 24909545 - 24909601
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||||||  ||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  24909545 gagaagagaactagtatattttaaaaactgaaaataaaaactatttcaaacaggctc 24909601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 44272403 - 44272451
Alignment:
Q  18 acttgtatatttcaaaa-actgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  44272403 acttgtatatttcaaaaaactgaaaacaaaaactatttcaaacaagctc 44272451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 13093 - 13147
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 63  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13093 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 13147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 22234 - 22180
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 63  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22234 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 22180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 12701089 - 12701040
Alignment:
Q  10 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12701089 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 12701040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 35929759 - 35929703
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35929759 gagaagaggacttatatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 35929703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 53584603 - 53584659
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53584603 gagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaacatgctc 53584659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 56100175 - 56100226
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  56100175 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 56100226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 21555432 - 21555382
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 59  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21555432 gagaagaagacttatatatttcaaaaactgaaaacaaaaactatttcaaac 21555382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 19598411 - 19598367
Alignment:
Q  17 gacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  19598411 gacttgtatatttcgaaaactgaaaacaaaaactatttcaaacag 19598367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 36609450 - 36609506
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactg-aaaacaaaaactatttcaaacaggct 64  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||    
T  36609450 gagaagaggatttgtatatttcaaaaactgaaaaacaaaaactatttcaaacaggct 36609506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 44243734 - 44243789
Alignment:
Q  10 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||||| ||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  44243734 agaagatgacttgtatatttcaaaaactaaaaacaaaatttatttcaaacaggctc 44243789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 23249522 - 23249466
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| | |||||||||||||||||| ||||||||||| | ||||||||||||||    
T  23249522 gagaagagggcttgtatatttcaaaaaccgaaaacaaaaattgtttcaaacaggctc 23249466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 35749437 - 35749385
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    ||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||    
T  35749437 gagaagatgacttgtatatttcaaaaattgaaaataaaaattatttcaaacag 35749385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 41842829 - 41842789
Alignment:
Q  20 ttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  41842829 ttgtatatttcaaaaaccgaaaacaaaaactatttcaaaca 41842789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 827881 - 827840
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaact 50  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  827881 gagaagaggacttgtatatttcaaaaaccgaaaacaaaaact 827840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 11371 - 11320
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11371 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 11320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 2814927 - 2814976
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 58  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2814927 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 2814976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 1067852 - 1067796
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1067852 gagaagagaacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaagctc 1067796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 24640389 - 24640445
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  24640389 gagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaagaggctc 24640445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 26394026 - 26394082
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  26394026 gagaagaagatttttatatttcaaaaactgaaaacaaaaactatttcaaagaggctc 26394082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 444573 - 444522
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  444573 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactattttaaaca 444522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 12324214 - 12324168
Alignment:
Q  19 cttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  12324214 cttgtatatttcaaaaactgaaaacaaaaactacttcaaacaggctc 12324168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 6200210 - 6200255
Alignment:
Q  20 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  6200210 ttgtatatttcaaaaactgaaaacaaaaaatatttcaaacaggctc 6200255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 23774121 - 23774069
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    |||||||  |||||||||||||||||| | |||| ||||||||||||||||||    
T  23774121 gagaagagaacttgtatatttcaaaaattaaaaataaaaactatttcaaacag 23774069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 18540 - 18596
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  18540 gagaagatgacttgtatatttcaaaaactaaaaccaaaaactatttcaaacaggctc 18596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 67923 - 67868
Alignment:
Q  10 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 65  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  67923 agaagaggacttgtatattttaaaaactgaaaacaaaaattatttcaaacaggctc 67868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 1020 - 970
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 59  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  1020 gagaaaaagacttgtatattttaaaaactgaaaacaaaaactatttcaaac 970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 1293 - 1343
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 59  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  1293 gagaaaaagacttgtatattttaaaaactgaaaacaaaaactatttcaaac 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 41326093 - 41326028
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctcgtaatttta 74  Q
    |||||||||| || ||||||||||||||| |||||||||||||||||||||| ||||  |||||||    
T  41326093 gagaagaagatttatatatttcaaaaactcaaaacaaaaactatttcaaacatgctcacaatttta 41326028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 8163680 - 8163732
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  8163680 gagaagagaacttgtatatttcaaaaacagaaaacaaaaactatttcaaacag 8163732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 40337103 - 40337155
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||    
T  40337103 gagaagatgacttgcatatttcgaaaactgaaaacaaaaactatttcaaacag 40337155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 2362419 - 2362471
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 61  Q
    |||||||||| |||||||||| |||||||||||||||||| | ||||||||||    
T  2362419 gagaagaagatttgtatattttaaaaactgaaaacaaaaattgtttcaaacag 2362471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 35589447 - 35589494
Alignment:
Q  12 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 59  Q
    |||| |||||||||||||||||||  ||||||||||||||||||||||    
T  35589447 aagaggacttgtatatttcaaaaatcgaaaacaaaaactatttcaaac 35589494  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 31637744 - 31637707
Alignment:
Q  23 tatatttcaaaaactgaaaacaaaaactatttcaaaca 60  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  31637744 tatattttaaaaactgaaaacaaaagctatttcaaaca 31637707  T

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Target: scaffold0140 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 21528 - 21473
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 64  Q
    ||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  21528 gagaagatgatttatatatttcaaaaactgaaaacaaaaactgtttcaaacaggct 21473  T

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Target: scaffold0121 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 37440 - 37495
Alignment:
Q  9 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 64  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  37440 gagaagaggacttgtatatttcaaaaaccgaaaacaaacactatttcaaataggct 37495  T

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