View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8061_low_20 (Length: 499)
Name: NF8061_low_20
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_20 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 24365114 - 24364790
Alignment:
| Q |
7 |
gtttatatttgacaacttttggttattgaccaaagaggttctttaatttttacagcaattaccaaataagtttactaggaaacatggagttggtctatct |
106 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24365114 |
gtttatatttgacaccttttgcttattgaccaaagaggttctttaatttttacagcaattaccaaataagtttactaggaaacatggagttggtctatct |
24365015 |
T |
|
| Q |
107 |
aatccagtgttgatcaagcttcctgatggcactggatggaaagtttattggnnnnnnntcaatggcgagatgtggtttgaaaagggatggaaaactttta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
24365014 |
aatccagtgttgatcaagcttcctgatggcactggatggaaagtttattggaaaaaaatcaatggcgagatgtggtttgaaaagggttggaaaactttta |
24364915 |
T |
|
| Q |
207 |
ctgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24364914 |
ctgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaat |
24364815 |
T |
|
| Q |
307 |
agattatgattcttcaagtgacact |
331 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
24364814 |
agattatgattcttcaagtgacact |
24364790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 38 - 329
Target Start/End: Original strand, 24369564 - 24369855
Alignment:
| Q |
38 |
aaagaggttctttaatttttacagcaattaccaaataagtttactaggaaacatggagttggtctatctaatccagtgttgatcaagcttcctgatggca |
137 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| ||||||||| | || |||||||||||||||||| ||||||||| |||| ||| |||||||| || |
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|
| T |
24369564 |
aaaggggttctttaatttttacagcaaataccaagtaagtttacaaagagacatggagttggtctatcaaatccagtggtgataaagactcctgatgaca |
24369663 |
T |
|
| Q |
138 |
ctggatggaaagtttattggnnnnnnntcaatggcgagatgtggtttgaaaagggatggaaaacttttactgaaaattactctcttgaacatggctgttt |
237 |
Q |
| |
|
|| |||||||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| || || |
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|
| T |
24369664 |
ctaaatggaaagtttattggaaaaaaatcaatggtgagatttggtttgaaaagggttggaaaacttttactgaaaattactctcttggacatggttgctt |
24369763 |
T |
|
| Q |
238 |
ggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaatagattatgattcttcaagtgaca |
329 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||| ||||| |||||| |
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|
| T |
24369764 |
ggtggtgtttgaatataaaggaactttcaagtttgatgtagtaatacttggcaagaatgcattagaaatagactatgatacttcatgtgaca |
24369855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 24344250 - 24344570
Alignment:
| Q |
13 |
atttgacaacttttggttattgaccaaagagg-ttcttt-aatttttacagcaattaccaaataagtttactaggaaacatggagttggtctatctaatc |
110 |
Q |
| |
|
|||||||| |||||| ||| |||||||| || |||||| ||||||||||| || ||||| |||||||||| | ||||||||||||||||||||| |||| |
|
|
| T |
24344250 |
atttgacaccttttgtttaatgaccaaaacggcttcttttaatttttacagaaaataccacataagtttacaaagaaacatggagttggtctatcaaatc |
24344349 |
T |
|
| Q |
111 |
cagtgttgatcaagcttcctgatggcactggatggaaagtttattggnnnnnnntcaatggcgagatgtggtttgaaaagggatggaaaacttttactga |
210 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||||||||||||||| || |||| ||||| |||||||||||||| |||||| ||||||||| |
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|
| T |
24344350 |
cagtgttgatcaagcctccagatggcactaaatggaaagtttattggaaaaaaatcgatggtgagatttggtttgaaaagggttggaaatattttactga |
24344449 |
T |
|
| Q |
211 |
aaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaatagat |
310 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| |||||||||||||||||||||| || |||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
24344450 |
aaattactctcttggacatggctctttggtggtgtttgaatataaaggaacttcgaaatttgatgtagtaatacttggtcggaatgcagtagaaatagac |
24344549 |
T |
|
| Q |
311 |
tatgattcttcaagtgacact |
331 |
Q |
| |
|
|||||| ||||| |||||||| |
|
|
| T |
24344550 |
tatgatacttcatgtgacact |
24344570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 38 - 327
Target Start/End: Original strand, 24354549 - 24354838
Alignment:
| Q |
38 |
aaagaggttctttaatttttacagcaattaccaaataagtttactaggaaacatggagttggtctatctaatccagtgttgatcaagcttcctgatggca |
137 |
Q |
| |
|
|||| ||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
24354549 |
aaaggggttctttaatttttacagaaaattccaaataagtttacaaggaaacatggagttggtctatcaaatccagtgttgatcaagcctccagatggca |
24354648 |
T |
|
| Q |
138 |
ctggatggaaagtttattggnnnnnnntcaatggcgagatgtggtttgaaaagggatggaaaacttttactgaaaattactctcttgaacatggctgttt |
237 |
Q |
| |
|
|| |||||||||||||||| ||||||| ||||| |||||||||||||| |||||| ||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
24354649 |
ctaaatggaaagtttattggaaaaaaatcaatggagagatttggtttgaaaagggttggaaatattttattgaaaattactctcttggacatggttgttt |
24354748 |
T |
|
| Q |
238 |
ggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaatagattatgattcttcaagtga |
327 |
Q |
| |
|
|||| |||| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
24354749 |
ggtggtgttcaaatataaaggagattcaaagtttgatgtacacatacttggccagaatgcagtagaaatagactatgatccttcatgtga |
24354838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 52 - 331
Target Start/End: Original strand, 24351478 - 24351757
Alignment:
| Q |
52 |
atttttacagcaattaccaaataagtttactaggaaacatggagttggtctatctaatccagtgttgatcaagcttcctgatggcactggatggaaagtt |
151 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||| | |||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
24351478 |
atttttacagcaaataccaaataattttacaaggagatatggagttggtctaacaaatccagtgttgatcaaggctcctgatggcactaaatggaaagtt |
24351577 |
T |
|
| Q |
152 |
tattggnnnnnnntcaatggcgagatgtggtttgaaaagggatggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaat |
251 |
Q |
| |
|
|| ||| ||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||| ||||| ||| |
|
|
| T |
24351578 |
tactggaaaaaaatcaatggtgagatttggtttgaaaagggttggaaacattttactgaaaattactctctacaacatggatgtttggtggtgtttaaat |
24351677 |
T |
|
| Q |
252 |
ataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaatagattatgattcttcaagtgacact |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| | ||||| || |||||||| |||||||||||| |||||||| |
|
|
| T |
24351678 |
ataaaggaacttccaagtttgatgtactaatacttggtaataatgcggttgaaatagactatgattcttcatgtgacact |
24351757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 45 - 313
Target Start/End: Original strand, 24358219 - 24358486
Alignment:
| Q |
45 |
ttctttaatttttacagcaattaccaaataagtttactaggaaacatggagttggtctatctaatccagtgttgatcaagcttcctgatggcactggatg |
144 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||| | |||||||| | |||| |||||||||||||| |||| ||||||||||||| ||| |
|
|
| T |
24358219 |
ttctttaattttt-cagcaaataccaaataagtttactaggagatatggagttcatttatcaaatccagtgttgataaagcctcctgatggcactaaatg |
24358317 |
T |
|
| Q |
145 |
gaaagtttattggnnnnnnntcaatggcgagatgtggtttgaaaagggatggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatg |
244 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| |||||||| |||||| || |
|
|
| T |
24358318 |
gaaagtttattggaaaaaaatcaatggcgagatttggtttgaaaagggttggaaatattttactgaaaattactctcttggacatggctctttggttgtg |
24358417 |
T |
|
| Q |
245 |
tttgaatataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaatagattat |
313 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || |||||| |||||||||||||||||||||| |
|
|
| T |
24358418 |
tttgaatataaaagaacttccaagtttgatgtacacatttttggccggaatgcagtagaaatagattat |
24358486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 52 - 313
Target Start/End: Original strand, 24313727 - 24313989
Alignment:
| Q |
52 |
atttttacagcaattaccaaataagtttactaggaaacatggagttggtctatctaatccagtgttgatcaagcttcctgatggcactggatggaaagtt |
151 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||| |||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
24313727 |
atttttacagcaaataccaaataattttacaaggagacatggagttggtctatcaaatccagtgttgataaagcctcctgatggcactaaatggaaagtg |
24313826 |
T |
|
| Q |
152 |
tattggnnnnnnn-tcaatggcgagatgtggtttgaaaagggatggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaa |
250 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||| ||| |||||| ||||||||||||||||||||||| |||||| |||||||| ||||| || |
|
|
| T |
24313827 |
tattggaaaaaaaatcaatggtgagatttggtttgaaaggggttggaaattttttactgaaaattactctcttggacatgggtgtttggtaatgttcaaa |
24313926 |
T |
|
| Q |
251 |
tataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaatagattat |
313 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||||||| |||||||||| |||||||||||||| |
|
|
| T |
24313927 |
tataaaggaacttcaaagtttgatgtactcatacttgaccagaatgcactagaaatagattat |
24313989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 33 - 316
Target Start/End: Original strand, 24361897 - 24362183
Alignment:
| Q |
33 |
tgaccaaagaggttctttaatttttacagcaattaccaaataagtttactaggaaacatggagttggtctatctaatccagtgttgatcaagcttcctga |
132 |
Q |
| |
|
|||||||| |||| ||||| |||||||| || |||||||| ||||||| |||| ||||||||||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
24361897 |
tgaccaaaagggttgtttaaattttacagaaaataccaaatgagtttacaaggagacatggagttggtctgtcaaatccagtgttgatcaagcctcctga |
24361996 |
T |
|
| Q |
133 |
tggcactggatggaaagtttattggnnnnnnntcaatggcgagatgtggtttgaaaagggatggaaaacttttactgaaaattactctcttgaacatggc |
232 |
Q |
| |
|
||| ||| |||||||||||||||| ||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24361997 |
tggaactaaatggaaagtttattggaaaaaaatcaatggtgagatttggttcgaaaagggttggaaaacttttactgaaaattactctcttggacatggg |
24362096 |
T |
|
| Q |
233 |
tgtttggtgatgtttgaatat---aaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaatagattatgat |
316 |
Q |
| |
|
| ||||||| ||||| | ||| |||||||||| ||||| |||| ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
24362097 |
tttttggtgttgtttaattatgaagaaggaacttctaagttccttgtacacatacttggcaagaatgcagtagaaatagactatgat |
24362183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 397 - 490
Target Start/End: Complemental strand, 24364724 - 24364631
Alignment:
| Q |
397 |
gcttaatcggaagaaggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttctt |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24364724 |
gcttaatcggaagaaggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttctt |
24364631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 397 - 490
Target Start/End: Original strand, 24369923 - 24370016
Alignment:
| Q |
397 |
gcttaatcggaagaaggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttctt |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24369923 |
gcttaatcggaagaaggctagacaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttctt |
24370016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 397 - 490
Target Start/End: Original strand, 24358567 - 24358660
Alignment:
| Q |
397 |
gcttaatcggaagaaggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttctt |
490 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24358567 |
gcttaattggaagaaggctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattttctt |
24358660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 466
Target Start/End: Original strand, 24354905 - 24354974
Alignment:
| Q |
397 |
gcttaatcggaagaaggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggt |
466 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| ||||| ||||||| |||||||||||| ||||| |
|
|
| T |
24354905 |
gcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctcataagaaagttagaggt |
24354974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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