View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_21 (Length: 490)
Name: NF8061_low_21
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 148 - 465
Target Start/End: Original strand, 42143408 - 42143728
Alignment:
| Q |
148 |
ttaacatgatcggatattttatatttcaaaaatcattttgaaattttgttgatgcatatgtcaaattgtcaaacacctataattttagaagctaaatttg |
247 |
Q |
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| T |
42143408 |
ttaacatgatcggatattttatatttcaaaaatcattttgaaattttgttgatgcatatgtcaaattgtcaaacacctataattttagaagctaaatttg |
42143507 |
T |
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| Q |
248 |
tgattcattcatatttcttatttcaacttagtatgattcattcatatttatataaccctgtgaacgttgtaatcaatggaattaactataatgagcaaaa |
347 |
Q |
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| T |
42143508 |
tgattcattcatatttcttatttcaacttagtctgattcattcatatttatataaccgtgtgaacgttgtaatcaatggaattaactataatgagcaaaa |
42143607 |
T |
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| Q |
348 |
tcaccgatccaaataatataattattttataagcaaaacaattcaatgatattaatttggagctaaaaac---aggtgggtcaccactcaacaacaaggt |
444 |
Q |
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| T |
42143608 |
tcaccgatccaaataatataattattttataagcaaaacaattcaatgatatgaatttggagctaaaaacagaaggtgggtcaccactcaacaacaaggt |
42143707 |
T |
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| Q |
445 |
gtagcacagatcatagatact |
465 |
Q |
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| T |
42143708 |
gtagcacagatcatagatact |
42143728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 42143295 - 42143410
Alignment:
| Q |
8 |
gagtgagatgaagtcaaggtgagacactgttacatatgttgtacacttttacttcaacttgcatgcatgcatgttagctagctatatgatttatatcttt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42143295 |
gagttagatgaagtcaaggtgagacactgttacatatgttgtacacttttacttcaacttgcatgcatgcatgttagctagctatatgatttatatcttt |
42143394 |
T |
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| Q |
108 |
ctatagattcagttta |
123 |
Q |
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| T |
42143395 |
ctatagattcagttta |
42143410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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