View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_24 (Length: 428)
Name: NF8061_low_24
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 424
Target Start/End: Complemental strand, 50687097 - 50686689
Alignment:
| Q |
15 |
aatataacatagaagaggacgaatcaatatatattgaatcaacatcacaacaaaatcgaaaatcaaaactccgcatcaagatcaattcacgaacaactca |
114 |
Q |
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| T |
50687097 |
aatataacatagatgaagac-aatcaatatatattgaatcaacatcacagcaaaatcgaaaatcaaaactccgcatcaagatcaattcacgaacaactca |
50686999 |
T |
|
| Q |
115 |
acaaacactaggcaattcttctttgctgaggggaaccaaatctgttgttaaaaaccacttaagtgagttgatcaactaaattgtctgatggtttattctt |
214 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50686998 |
acacacactaggcaattcttttttgctgaggggaaccaaatctgttgttaaaaaccacttaagtgagttgatcaactaaattgtttgatggtttattctt |
50686899 |
T |
|
| Q |
215 |
tgaaaaatgtacgcaaatccttccatttgtgaggttacccaagcaaaaactcccacttgagaaactgaccgtatcgcgagcaaaacactcattgctgaga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50686898 |
tgaaaaatgtacgcaaatccttccatttgtgaggttacccaagcaaaaactcccacttgagaaactgaccgtatcgcgagcaaaacactcattgctgaga |
50686799 |
T |
|
| Q |
315 |
tatttccacaagaccgcgtgtcttctcaatagagtgtgatatggttgtccttcatctcccaaggttatccttttcccttttcacagtctcatcttcttca |
414 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50686798 |
tatttccacaacaccgcgtgtcttctcaatagagtgtgatatggttgtccttcatctcccgaggttatccttttcccttttcacagtctcatcttcttca |
50686699 |
T |
|
| Q |
415 |
ttttctcgca |
424 |
Q |
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|||||||||| |
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| T |
50686698 |
ttttctcgca |
50686689 |
T |
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