View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_30 (Length: 393)
Name: NF8061_low_30
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 40063131 - 40063507
Alignment:
| Q |
1 |
ttgtgctgtgttgtaataataaataataaattgttgtgttgagttatgaaatgggttgtgacgtttgaagtttgaaagatacgtagtatagagttattat |
100 |
Q |
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| T |
40063131 |
ttgtgctgtgttgtaataataaataataaattgttgtgttgagttatgaaatgggttgtgacgtttgaagtttgaaagatacgtagtatagagttattat |
40063230 |
T |
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| Q |
101 |
gaagattaaggaaactgttttttctctgacaaggaaaaaatagatgtgataaaaacgtgtataagggnnnnnnn-ttgatgatgatgatggagaaaagaa |
199 |
Q |
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| T |
40063231 |
gaagattaaggaaactgttttttctctgacaaggaaaaaatagatgtgataaaaacgtgtataagggaaaaaaaattgatgatgatgatggagaatagaa |
40063330 |
T |
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| Q |
200 |
aagaaaacagagtactctgtttatttatggattaaaaataaatgaacatgacgtgacggtagctaggttttacttacatatatatacactgacgcacgca |
299 |
Q |
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| T |
40063331 |
aagaaaacagagtactctgtttatttatggattaaaaataaatgaacatgacgtgacggtagctaggttttacttacatatatatacactgacgcacgca |
40063430 |
T |
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| Q |
300 |
atgaatcaatggatgtgaccaacactactgaagcgtaaatgagaaatactatt-actattaatgagaatggtgaagg |
375 |
Q |
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| T |
40063431 |
atgaatcaatggatgtgaccaacactactgaagcgtaaatgagaaatactattaactattaatgagaatggtgaagg |
40063507 |
T |
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