View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8061_low_33 (Length: 380)
Name: NF8061_low_33
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 2311047 - 2311402
Alignment:
| Q |
21 |
tctacagtattattattcatcgacacatcatcacttcacataattctacttttgacatgtcacaattttatgctccctacagcctcaagtatacaataca |
120 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2311047 |
tctacagtattattattcatgaacacatgatcacttcacataattctacttttgacatgtcacaattttatgcttcctacagcctcaagtatacaataca |
2311146 |
T |
|
| Q |
121 |
cagtagtgcacacactata--tagacaaaaacctttaactgg--------agattgaagctcataattgtgtatattttatttataatctttccttctct |
210 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||| | |||||||| |
|
|
| T |
2311147 |
cagtagtgcacacactatagatagacacaaacctttaactggttacacaaagattgaagctcataattgtgtatatttgatttataatcatcccttctct |
2311246 |
T |
|
| Q |
211 |
atcttccttatgctatataagccccacccccatcctctcttatcaattgaatcgtgactacaattccttcaacttctattataacacatagaattccttc |
310 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2311247 |
atcttccttatgctatataagccccacgcccatcctctcttatcaattgaatcgtgactacaattccttcaacttctattatatcacatagaattccttc |
2311346 |
T |
|
| Q |
311 |
aatttctactatgccactattgaaaccctctttgtccattgttactgctctaagtg |
366 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2311347 |
aatttatactatgccactattgaggccctctttgtccattgttactgctctaagtg |
2311402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University