View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8061_low_34 (Length: 372)
Name: NF8061_low_34
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 55907699 - 55908037
Alignment:
| Q |
17 |
aatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccctttccttgaagaac |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907699 |
aatattacaactttgaattctctcatttgttccaacattgcttctctacgtaacaatgaccttgttcttatttctgattgcttccctttccttgaagaac |
55907798 |
T |
|
| Q |
117 |
ttgactttagtagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcctaagctccgcaaggttaa |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907799 |
ttgacttcagtagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcctaagctccgcaaggttaa |
55907898 |
T |
|
| Q |
217 |
tctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatgttgaaatgtccattttta |
316 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907899 |
tctctcgggttattataatatagacgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatgttgaaatgtccattttta |
55907998 |
T |
|
| Q |
317 |
actcatgatggtgtcgcttctgctatccgtgagagacct |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907999 |
actcatgatggtgtcgcttctgctatccgtgagagacct |
55908037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 548043 - 547943
Alignment:
| Q |
21 |
ttacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccctttccttgaagaacttga |
120 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||| |||||| ||||| ||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
548043 |
ttacaactttgaactctctcacttgttccaacattgattctctctgtaacaacgacctggtttgtatatctggttgcttccctttccttgaagaacttga |
547944 |
T |
|
| Q |
121 |
c |
121 |
Q |
| |
|
| |
|
|
| T |
547943 |
c |
547943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 3437647 - 3437755
Alignment:
| Q |
20 |
attacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccctttccttgaagaacttg |
119 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||| || ||| ||| || | || ||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
3437647 |
attacaactttgacctctctcagttgttccaactttgattttctccatgaccgctatctaattcttatctctgattgcttccctttacttgaagtacttg |
3437746 |
T |
|
| Q |
120 |
actttagta |
128 |
Q |
| |
|
|| |||||| |
|
|
| T |
3437747 |
accttagta |
3437755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 300
Target Start/End: Complemental strand, 547908 - 547773
Alignment:
| Q |
165 |
atgtttgggtaaagactatggcaatggtgcttcctaagctccgcaaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatg |
264 |
Q |
| |
|
||||| |||||||| ||||| ||| | ||||||||||||||||||||||||| | || ||| |||| ||||| ||||||| | ||||| || || || |
|
|
| T |
547908 |
atgttggggtaaaggctatgtcaacagcgcttcctaagctccgcaaggttaatttatctggtcattactatataaatgactcattgctttttcacttgtg |
547809 |
T |
|
| Q |
265 |
taagaattgtgagtttcttgaagaggttatgatgtt |
300 |
Q |
| |
|
| | | |||||||||||| |||||| || ||||||| |
|
|
| T |
547808 |
tcaaagttgtgagtttctcgaagagtttgtgatgtt |
547773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 303
Target Start/End: Original strand, 1527362 - 1527472
Alignment:
| Q |
193 |
gcttcctaagctccgcaaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggtt |
292 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| || | || | ||||||||| |||||||| || ||||| ||||||| |||||| ||||| || |
|
|
| T |
1527362 |
gcttcctaagctccacaaggttaatctctctggtcatcactatgcaaatgactcgttgcttttgcacttgtgtaaaaattgtgtatttcttcaagagatt |
1527461 |
T |
|
| Q |
293 |
atgatgttgaa |
303 |
Q |
| |
|
|||||||||| |
|
|
| T |
1527462 |
ttgatgttgaa |
1527472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 1755582 - 1755485
Alignment:
| Q |
20 |
attacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccctttccttgaagaact |
117 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| ||| ||| |||| ||||||| | | || ||| |||| || |||||||| ||||||||||| |
|
|
| T |
1755582 |
attacaactttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgactgtttccctttgcttgaagaact |
1755485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 1036635 - 1036973
Alignment:
| Q |
17 |
aatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccctttccttgaagaac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1036635 |
aatattacaactttgacttctctcatttgttccaacattgcttctatatgtaacaatgatcttgttcttatttctgattgctttcctttccttgaagaac |
1036734 |
T |
|
| Q |
117 |
ttgactttagtagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcctaagctccgcaaggttaa |
216 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036735 |
ttgacttcaatagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcctaagctccgcaaggttaa |
1036834 |
T |
|
| Q |
217 |
tctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatgttgaaatgtccattttta |
316 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036835 |
tctctcgggttattataatatagacgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatgttgaaatgtccattttta |
1036934 |
T |
|
| Q |
317 |
actcatgatggtgtcgcttctgctatccgtgagagacct |
355 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1036935 |
actcatgatgatgtcgcttctgctatccgtgagagacct |
1036973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 354
Target Start/End: Original strand, 17627169 - 17627343
Alignment:
| Q |
180 |
ctatggcaatggtgcttcctaagctccgcaaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtt |
279 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||| | || || |||| ||||| |||||| | ||||||||| || ||||| ||||||||||| |
|
|
| T |
17627169 |
ctatgtcaatggtgcttcctaagctccgcaagataaatttatctcgtcattacgatataagtgactcattacttttgcacttgtgtaaaaattgtgagtt |
17627268 |
T |
|
| Q |
280 |
tcttgaagaggttatgatgttgaaatgtccatttttaactcatgatggtgtcgcttctgctatccgtgagagacc |
354 |
Q |
| |
|
||| ||||||||| || |||| || | | ||| |||||| |||||| | |||||||| |||||||||||||| |
|
|
| T |
17627269 |
tctcgaagaggttgtgttgttcaagtattcatccttaacttgtgatggcattgcttctgccatccgtgagagacc |
17627343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 44244857 - 44244814
Alignment:
| Q |
263 |
tgtaagaattgtgagtttcttgaagaggttatgatgttgaaatg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44244857 |
tgtaagaattgtgagtttcttgaagaggttaggatgttgaaatg |
44244814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 32268573 - 32268533
Alignment:
| Q |
11 |
tcgaagaatattacaactttgacttctctcatttgttccaa |
51 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||| |
|
|
| T |
32268573 |
tcgaagaagattacaactttgacctctctcacttgttccaa |
32268533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University