View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_36 (Length: 371)
Name: NF8061_low_36
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 353
Target Start/End: Complemental strand, 41820128 - 41819784
Alignment:
| Q |
9 |
ctacattattcttaaaaaatcgctggtcctttttaacaaggactataaacgccgctcgctaattgctttttgaataatacattgagttgtaaatgaggta |
108 |
Q |
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| T |
41820128 |
ctacattatttttaaaaaatcgctggtcctttttaacaaggactataaacgccgctcgctaattgctttttgaataatacattgagttgtaaatgaggta |
41820029 |
T |
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| Q |
109 |
gatagttataatgcagatgggcatggttcttggattggcacttgcattcattcttggaacaggattgcactttggagctaaattatttacaaaagatatt |
208 |
Q |
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| T |
41820028 |
gatagttataatgcagatgggcatggttcttggattggcacttgcattcattcttggaacaggattgcactttggagctaaattatttacaaaagatatt |
41819929 |
T |
|
| Q |
209 |
gatgtcctccacctcattagagttggggtcccggtaatttattcgtgttcaaatttggaaaggttatattgataatttaaattctcaaaccccttaaaaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41819928 |
gatgtcctccacctcattagagttggggtcccggtaatttattcgtgttcaaatttggaaaggttatattgataatttaaattttcaaaccccttaaaaa |
41819829 |
T |
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| Q |
309 |
gtggaacttacattcatattaactctctttccagtttgtagcact |
353 |
Q |
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| T |
41819828 |
gtggaacttacattcatattaactctctttccagtttgtagcact |
41819784 |
T |
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