View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_4 (Length: 761)
Name: NF8061_low_4
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 684; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 18 - 753
Target Start/End: Complemental strand, 47460836 - 47460100
Alignment:
| Q |
18 |
agaagggcactcagattccctaacatcttctcttccttcatcctcatcaagcaacatagcagaacaatccttaaaggggcaatagaacttaggaacagta |
117 |
Q |
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| T |
47460836 |
agaagcgcactcagattccctaacatcttctcttccttcatcctcatcaagcaacatagcagaacaatccttaaaggggcaatagaacttaggaacagta |
47460737 |
T |
|
| Q |
118 |
agnnnnnnngcctcacataatgcatcattccacttatcaatcaattctttaggaagcaatttcctgcatgactcaagctccaacacacctttgcagttca |
217 |
Q |
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| T |
47460736 |
agaaaaaaagcctcacataatgcatcattccacttatcaatcaattctttaggaagcaatttcctgcatgactcaagctccaacacacctttgcagttca |
47460637 |
T |
|
| Q |
218 |
aaccaggacaagacacatttgttatgttgtcttggatttttgttgccacttgtttgacaacacattcagaacaaaatgaatggtaaca-tatctgattcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47460636 |
aaccaggacaagacacatttgttatgttgtcttggatttttgttgccacttgtttgacaacacattcagaacaaaatgaatggtaacaatatctgattcc |
47460537 |
T |
|
| Q |
317 |
taaacatttcatcagccgtttttgtttcggcacaaatctcgcaaatgatgattggagaagacggttcatctgctttgatgacaatgccaacttcaataga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460536 |
taaacatttcatcagccgtttttgtttcggcacaaatctcgcaaatgatgattggagaagacggttcatctgctttgatgacaatgccaacttcaataga |
47460437 |
T |
|
| Q |
417 |
ctttgacgaagatgctacgcagtgcaacggtggtgactgcataagggtttggtgaaactgtaactcttcagaaaccgtttttgatgaagatgctacgcat |
516 |
Q |
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| T |
47460436 |
ctttgacgaagatgctacacagtgcaacggtggtgactgcataagggtttggtgaaactgtaactcttcagaaaccgtttttgatgaagatgctacgcat |
47460337 |
T |
|
| Q |
517 |
ggtaatgaacgtggtggtgccaagaaggaagaggatgaagggttttggtgagaagtgatgacagaggccaataaggtttcttgaaactgtaatgcttcag |
616 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460336 |
ggtaatgaatgtggtggtgccaagaaggaagaggatgaagggttttggtgagaagtgatgacagaggccaataaggtttcttgaaactgtaatgcttcag |
47460237 |
T |
|
| Q |
617 |
cgtacttgtcatcggagacagggacgttagggtcaatttcatcgtcggagacaacagagaagtaaaagtcgtcaacggtgtcaggaccaaggaatgagga |
716 |
Q |
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| T |
47460236 |
cgtacttgtcatcggagacaggaacgttagggtcaatttcatcgtcggagacaacagagaagtaaaagtcgtctacggtgtcaggaccaaggaatgagga |
47460137 |
T |
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| Q |
717 |
tgattgttgttgtgccattgttgtttgtgtctctgct |
753 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
47460136 |
tgattgttgttgtgccattgttgtttgtgtctatgct |
47460100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 25 - 361
Target Start/End: Complemental strand, 47467495 - 47467159
Alignment:
| Q |
25 |
cactcagattccctaacatcttctcttccttcatcctcatcaagcaacatagcagaacaatccttaaaggggcaatagaacttaggaacagtaagnnnnn |
124 |
Q |
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|||||||||||||||| ||||| || |||||| ||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||| ||| |
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| T |
47467495 |
cactcagattccctaatatcttgtccatcttcattttcatccagcatcatagcagagcaatccttaaagggacaatagaacttaggaacagcaagaaaaa |
47467396 |
T |
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| Q |
125 |
nngcctcacataatgcatcattccacttatcaatcaattctttaggaagcaatttcctgcatgactcaagctccaacacacctttgcagttcaaaccagg |
224 |
Q |
| |
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| T |
47467395 |
aagcctcacacaatgcatcattccacctatcaatcaactcttttggaagcaatgacctgcaagattcaagctctaacacacccttgcagttcaaaccagg |
47467296 |
T |
|
| Q |
225 |
acaagacacatttgttatgttgtcttggatttttgttgccacttgtttgacaacacattcagaacaaaatgaatggtaacatatctgattcctaaacatt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| || | || || |||||| |
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| T |
47467295 |
acaagacacatttgttatgttgtcttggatttttgtagccacttgtttgacaacacattcagaacaaaatgaatgataacatctcaggtttctgaacatt |
47467196 |
T |
|
| Q |
325 |
tcatcagccgtttttgtttcggcacaaatctcgcaaa |
361 |
Q |
| |
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||||||| |||||||||||| ||||||||||| |||| |
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| T |
47467195 |
tcatcagtcgtttttgtttccgcacaaatctcacaaa |
47467159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 449 - 736
Target Start/End: Complemental strand, 47467008 - 47466724
Alignment:
| Q |
449 |
gtgactgcataagggtttggtgaaactgtaactcttcagaaaccgtttttgatgaagatgctacgcatggtaatgaacgtggtggtgccaagaaggaaga |
548 |
Q |
| |
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|||||| ||||||||||| || ||| ||||||| ||| || |||||||||||||| |||||||| || || | ||||||||| || || |||| |
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| T |
47467008 |
gtgacttcataagggtttcgttgaacagtaactcatcatcgacagtttttgatgaagacgctacgcacggaaaaaatggtggtggtgaagaggagaaaga |
47466909 |
T |
|
| Q |
549 |
ggatgaagggttttggtgagaagtgatgacagaggccaataaggtttcttgaaactgtaatgcttcagcgtacttgtcatcggagacagggacgttaggg |
648 |
Q |
| |
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||| || |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| || |||| |
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| T |
47466908 |
ggacgagtggttttggtgagaagtgatggcagaggccattaaggtttcttggaactgtaatgcttcagcgtacttgtcatcggagacaaaaac---aggg |
47466812 |
T |
|
| Q |
649 |
tcaatttcatcgtcggagacaacagagaagtaaaagtcgtcaacggtgtcaggaccaaggaatgaggatgattgttgttgtgccattg |
736 |
Q |
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||| |||| | || |||||| ||||||||||| |||||| || |||||| | |||| ||||||||| ||| |||||| ||||||| |
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| T |
47466811 |
tcagtttcttgatcaaagacaatagagaagtaaaggtcgtctacagtgtcaaggccaatgaatgaggaggatgcttgttgcgccattg |
47466724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 47455733 - 47455576
Alignment:
| Q |
20 |
aagggcactcagattccctaacatcttctcttccttcatcctcatcaagcaacatagcagaacaatccttaaaggggcaatagaacttaggaacagtaag |
119 |
Q |
| |
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||||||| ||||||||||||| |||||| ||||||| |||||| | |||||||||||||||||||||||| || || ||||| ||||||||||||| |
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| T |
47455733 |
aagggcattcagattccctaatatcttccaccccttcattctcatccaacaacatagcagaacaatccttaaatggacagtagaatttaggaacagtaac |
47455634 |
T |
|
| Q |
120 |
nnnnnnngcctcacataatgcatcattccacttatcaatcaattctttaggaagcaat |
177 |
Q |
| |
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|| ||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47455633 |
aaaaagagcttcacacaatgcatcattccacttatcaaacaattctttaggaagcaat |
47455576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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