View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_low_43 (Length: 342)

Name: NF8061_low_43
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_low_43
NF8061_low_43
[»] chr6 (7 HSPs)
chr6 (23-309)||(5650622-5650905)
chr6 (100-298)||(3259688-3259887)
chr6 (162-286)||(9614041-9614165)
chr6 (167-298)||(10485229-10485361)
chr6 (57-125)||(29424666-29424734)
chr6 (209-286)||(14925394-14925471)
chr6 (40-124)||(27824750-27824834)
[»] chr8 (8 HSPs)
chr8 (166-286)||(15001537-15001657)
chr8 (91-303)||(12753221-12753434)
chr8 (166-298)||(30542923-30543056)
chr8 (66-286)||(7591361-7591581)
chr8 (167-298)||(10467136-10467268)
chr8 (57-125)||(16595224-16595292)
chr8 (100-298)||(6386581-6386780)
chr8 (201-298)||(34101614-34101712)
[»] chr2 (12 HSPs)
chr2 (91-267)||(26796225-26796400)
chr2 (166-302)||(38623186-38623323)
chr2 (166-286)||(6896239-6896359)
chr2 (201-298)||(2086169-2086266)
chr2 (201-302)||(42365683-42365785)
chr2 (209-286)||(35114899-35114976)
chr2 (166-245)||(41366050-41366129)
chr2 (208-286)||(4641627-4641705)
chr2 (230-302)||(31193950-31194023)
chr2 (230-302)||(31212583-31212656)
chr2 (100-245)||(42706364-42706509)
chr2 (162-298)||(44284696-44284833)
[»] chr1 (10 HSPs)
chr1 (84-303)||(1601171-1601388)
chr1 (173-298)||(39792894-39793019)
chr1 (18-125)||(30798826-30798933)
chr1 (91-222)||(504429-504560)
chr1 (166-245)||(6029316-6029395)
chr1 (100-298)||(45490836-45491035)
chr1 (100-286)||(26118189-26118375)
chr1 (235-302)||(7146909-7146977)
chr1 (167-298)||(42512731-42512863)
chr1 (166-286)||(51703138-51703258)
[»] chr3 (9 HSPs)
chr3 (167-298)||(50386336-50386468)
chr3 (200-298)||(39052718-39052817)
chr3 (201-302)||(24571388-24571490)
chr3 (201-300)||(1344585-1344685)
chr3 (31-123)||(44000198-44000290)
chr3 (57-125)||(8067111-8067179)
chr3 (167-298)||(31882902-31883034)
chr3 (167-298)||(41682933-41683065)
chr3 (166-250)||(49748840-49748924)
[»] chr4 (21 HSPs)
chr4 (173-286)||(50729434-50729547)
chr4 (166-286)||(3649710-3649830)
chr4 (100-287)||(37865761-37865948)
chr4 (161-286)||(20517914-20518039)
chr4 (166-250)||(22318312-22318396)
chr4 (166-286)||(39078735-39078855)
chr4 (167-298)||(44649043-44649175)
chr4 (167-298)||(50178371-50178503)
chr4 (166-265)||(26083413-26083512)
chr4 (100-298)||(36885940-36886139)
chr4 (209-298)||(32181380-32181470)
chr4 (201-298)||(50727792-50727890)
chr4 (201-298)||(50735806-50735904)
chr4 (254-302)||(31445751-31445800)
chr4 (209-286)||(42772905-42772982)
chr4 (162-302)||(44355730-44355870)
chr4 (18-106)||(7001780-7001868)
chr4 (65-125)||(9435371-9435431)
chr4 (166-286)||(20802423-20802543)
chr4 (166-298)||(36743568-36743700)
chr4 (166-286)||(53200535-53200655)
[»] chr5 (8 HSPs)
chr5 (201-298)||(31770483-31770581)
chr5 (173-286)||(18470333-18470446)
chr5 (91-286)||(41790368-41790562)
chr5 (201-298)||(4689590-4689688)
chr5 (201-298)||(39918613-39918711)
chr5 (201-298)||(41459694-41459792)
chr5 (166-298)||(11963412-11963545)
chr5 (208-303)||(32528828-32528924)
[»] scaffold0957 (1 HSPs)
scaffold0957 (211-298)||(2388-2476)
[»] scaffold0650 (1 HSPs)
scaffold0650 (166-286)||(1548-1668)
[»] chr7 (4 HSPs)
chr7 (91-298)||(21784871-21785079)
chr7 (201-298)||(43158573-43158671)
chr7 (166-298)||(47953265-47953398)
chr7 (57-125)||(48699364-48699432)
[»] scaffold0360 (1 HSPs)
scaffold0360 (162-233)||(13537-13608)
[»] scaffold0280 (1 HSPs)
scaffold0280 (166-286)||(13592-13712)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 5650905 - 5650622
Alignment:
Q  23 aacacaatacaagatataacaataaatgacaatgttttgtggtattgaatgatttatggtcttgtacaatttgtggtggacaaaaagctactttggtatt 122  Q
    ||||||| |||||| ||||||| |||||||||  ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  5650905 aacacaaaacaagacataacaacaaatgacaaatttttgtggtattgaatgatttctgatcttgtacaatttgtggtggacaaaaagctactttggtatt 5650806  T
Q  123 ttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtcc 222  Q
    || |||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||    
T  5650805 ttgcgcaatttatatgtgagaccaaatgttgtgctatgatttagtgaggaacaaaaatttcagtttttgtcgtatctattgccttcagtttgtcttgtcc 5650706  T
Q  223 atgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcatttttagcatatcaaacacacttatatt 309  Q
     |||||||||||||||||||||| ||  || |||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||    
T  5650705 -tgaaatagttctacaaatcaaatac--tagaactaaagttgtcatgtcttatctttcatttttagcagatcaaaaacactcatatt 5650622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 298
Target Start/End: Original strand, 3259688 - 3259887
Alignment:
Q  100 ggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaatttttgttatatct 199  Q
    |||||||| |||| ||||||||||||  ||| || || ||| ||| ||| |||| ||| |  ||| |||||| |||||||| | | |||||||  | |||    
T  3259688 ggacaaaatgctattttggtattttagacaacttgtacgtgggataaaaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtct 3259787  T
Q  200 attgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
     |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||| ||||||  |||| |||| |||| ||||||||| |||||||    
T  3259788 cttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactagagttgttttgtcatgtccttcattttttagcaaatcaaac 3259887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 9614041 - 9614165
Alignment:
Q  162 tttagtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaag 261  Q
    ||||||||| |||||||| ||||| |||||| || ||  |||||| |||||| || ||||| ||||| |||| ||||||||||| | | || |||| |||    
T  9614041 tttagtgagtaacaaaaacttcaaattttgtcatgtcccttgcctccagtttatcctgtccttgaaacagttttacaaatcaaacattgtacaactgaag 9614140  T
Q  262 ttgtcatgtcttgtctttcattttt 286  Q
    || || |||  |||| |||||||||    
T  9614141 ttttcttgttatgtccttcattttt 9614165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 298
Target Start/End: Original strand, 10485229 - 10485361
Alignment:
Q  167 tgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtc 266  Q
    ||||| |||||||| ||| |||||||  | ||| |||||| ||||||||| ||| | ||||||| || ||||||||||| |||  | ||||  ||||||     
T  10485229 tgagggacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaataattttacaaatcaaacactggacaactggagttgtt 10485328  T
Q  267 atgtcttgtctttca-tttttagcatatcaaac 298  Q
     ||||||||| |||| ||||||||| |||||||    
T  10485329 ttgtcttgtccttcattttttagcaaatcaaac 10485361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 29424734 - 29424666
Alignment:
Q  57 ttttgtggtattgaatgatttatggtcttgtacaatttgtggtggacaaaaagctactttggtatttta 125  Q
    |||| ||||||||||| |||| |||||||||||  ||| ||||||||||||| ||| ||| ||||||||    
T  29424734 ttttatggtattgaataatttttggtcttgtacgttttttggtggacaaaaaactatttttgtatttta 29424666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 14925471 - 14925394
Alignment:
Q  209 agtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcattttt 286  Q
    |||||||| ||| | ||||| |||| ||||||||||| |||  | |||| ||||||||||||| |||| |||||||||    
T  14925471 agtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgtcatgtcctgtccttcattttt 14925394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 27824834 - 27824750
Alignment:
Q  40 aacaataaatgacaatgttttgtggtattgaatgatttatggtcttgtacaatttgtggtggacaaaaagctactttggtatttt 124  Q
    ||||||| |||||||  |||| ||||||||||| |||| || |||| ||  |||| || |||||||||||||| ||| |||||||    
T  27824834 aacaatacatgacaaacttttatggtattgaataatttttgatcttatatgatttttgttggacaaaaagctatttttgtatttt 27824750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 286
Target Start/End: Original strand, 15001537 - 15001657
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||||||| |||||||| | |||||||||| ||||||||| ||||| ||||| |||| ||||||||||| |||  | |||| |||||||    
T  15001537 gtgagggacaaaaatttcagtttttgttctgtctattgcctccagtttgtcctgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 15001636  T
Q  266 catgtcttgtctttcattttt 286  Q
      |||| |||| |||||||||    
T  15001637 tctgtcctgtccttcattttt 15001657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 303
Target Start/End: Complemental strand, 12753434 - 12753221
Alignment:
Q  91 atttgtggtggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaattttt 190  Q
    |||| ||| |||||||| | || ||||||||||||  ||| || |||||| ||  ||| |||| ||| |  ||| ||||||||||||||| | | |||||    
T  12753434 atttttgggggacaaaatgttattttggtattttagacaacttgtatgtgggacaaaaagttgtgttgtggtttggtgaggaacaaaaatatgagttttt 12753335  T
Q  191 gttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagc 289  Q
    ||  | ||  |||||||||||||||| ||| | ||||| |||  ||||||||||| |||  | ||||| ||||||  |||| |||| |||| ||||||||    
T  12753334 gtcttgtcatttgccttcagtttgtcctgtacctgaaacagtcttacaaatcaaacactggacaactagagttgttttgtcctgtccttcattttttagc 12753235  T
Q  290 atatcaaacacact 303  Q
    | ||||||||||||    
T  12753234 aaatcaaacacact 12753221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 298
Target Start/End: Complemental strand, 30543056 - 30542923
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||| | | |||||||  | || ||||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||||||||||    
T  30543056 gtgagggacaaaaatatgagtttttgtcctgtccattgcctccagtttgtcatgtacctgaaacagttttacaaatcaaacactggacaactaaagttgt 30542957  T
Q  266 catgtcttgtctttca-tttttagcatatcaaac 298  Q
     ||||| |||| |||| ||||||||| |||||||    
T  30542956 tatgtcatgtccttcattttttagcaaatcaaac 30542923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 286
Target Start/End: Complemental strand, 7591581 - 7591361
Alignment:
Q  66 attgaatgatttatggtcttgtacaatttgtggtggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcattta 165  Q
    ||||||| |||| | || || ||| |||| ||| |||||||| |||| |||| |||||||  ||| ||||| ||| ||  ||| |||| ||| |  |||     
T  7591581 attgaataattttttgttttatacgatttttgggggacaaaatgctattttgatattttagacaacttatacgtgtgacaaaaagttgtgttgtggtttg 7591482  T
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
     ||||| |||||||| ||| |||||||  | ||| |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | |||| |||||||    
T  7591481 ctgaggcacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 7591382  T
Q  266 catgtcttgtctttcattttt 286  Q
      |||| |||| |||||||||    
T  7591381 tctgtcctgtccttcattttt 7591361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 298
Target Start/End: Original strand, 10467136 - 10467268
Alignment:
Q  167 tgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtc 266  Q
    |||||||||||||| ||| |||||||  | ||| |||||| ||||||||| ||| | | ||| |||| ||||||||||| |||  | ||||| ||||||     
T  10467136 tgaggaacaaaaatatcagtttttgtcttgtctcttgcctccagtttgtcctgtacctaaaacagttttacaaatcaaacactggacaactagagttgtt 10467235  T
Q  267 atgtcttgtctttca-tttttagcatatcaaac 298  Q
     |||| |||| |||| ||||||||| |||||||    
T  10467236 ctgtcctgtccttcattttttagcaaatcaaac 10467268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 16595292 - 16595224
Alignment:
Q  57 ttttgtggtattgaatgatttatggtcttgtacaatttgtggtggacaaaaagctactttggtatttta 125  Q
    |||| ||||||||||| |||| ||||||| ||| |||| ||||| ||||||||||| ||| ||||||||    
T  16595292 ttttttggtattgaataatttttggtcttatacgatttttggtgaacaaaaagctatttttgtatttta 16595224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 298
Target Start/End: Original strand, 6386581 - 6386780
Alignment:
Q  100 ggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaatttttgttatatct 199  Q
    |||||||| |||| ||||||||||||  ||| || || ||||||  ||| |||| ||| |  ||| |||||| |||||||| | | |||||||  |||||    
T  6386581 ggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctatct 6386680  T
Q  200 attgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
     || ||| ||||||||| | | | ||||| |||| || |||||||| |||  | ||||| |||||| |||| ||||| |||| ||||||||| |||||||    
T  6386681 tttacctccagtttgtcctatacctgaaacagttttataaatcaaacactggacaactacagttgttatgttttgtccttcattttttagcaaatcaaac 6386780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 298
Target Start/End: Original strand, 34101614 - 34101712
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
    |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||| ||||||  ||||||||| |||| ||||||||| |||||||    
T  34101614 ttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactagagttgttctgtcttgtccttcattttttagcaaatcaaac 34101712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 267
Target Start/End: Original strand, 26796225 - 26796400
Alignment:
Q  91 atttgtggtggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaattttt 190  Q
    |||| ||||||||||||  ||| ||||||||||||  ||| || || ||| ||  ||| |||||||| |  |||||||||| ||| |||||| |||||||    
T  26796225 atttttggtggacaaaagacta-tttggtattttagacaacttgtacgtgtgacaaaaagttgcgttgtgctttagtgagggacacaaattttaattttt 26796323  T
Q  191 gttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtca 267  Q
     |  |||| |||||||  ||||||| |||||| || || |||| ||||||||||| |||||||||||| ||||||||    
T  26796324 atcctatccattgcctgaagtttgttttgtccttgtaacagttttacaaatcaaacactataaaactatagttgtca 26796400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 302
Target Start/End: Complemental strand, 38623323 - 38623186
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||||||| |||||||  | || |||||||  |||||||| ||||| ||||| |||| ||||||||||| | |  | |||| |||||||    
T  38623323 gtgagggacaaaaatttcagtttttgtcttttccattgcctcaagtttgtcctgtccctgaaacagttttacaaatcaaacattggataactgaagttgt 38623224  T
Q  266 catgtcttgtctttc-atttttagcatatcaaacacac 302  Q
     ||||| |||| ||| ||||||| || |||||||||||    
T  38623223 tatgtcatgtccttcaatttttaacaaatcaaacacac 38623186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 286
Target Start/End: Original strand, 6896239 - 6896359
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||||||| ||||| |  | ||  |||||| |||||||| |||||| ||||| |||| ||||||||||| |||  | |||| |||||||    
T  6896239 gtgagggacaaaaatttcagtttttatcctgtcccttgcctccagtttgttttgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 6896338  T
Q  266 catgtcttgtctttcattttt 286  Q
      |||| ||||||||||||||    
T  6896339 tctgtcctgtctttcattttt 6896359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 298
Target Start/End: Original strand, 2086169 - 2086266
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
    |||||| ||||||||||||| | ||||| |||| ||||||||||| |||  | ||||| ||||||| ||||||||| |||| ||||||||| |||||||    
T  2086169 ttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactggacaactagagttgtc-tgtcttgtccttcattttttagcaaatcaaac 2086266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 42365683 - 42365785
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaaca 299  Q
    |||||| ||||||||| ||| | |||||  ||| ||||||||||| |||| | ||||| |||||| ||||| |||| |||| ||||||||| ||||||||    
T  42365683 ttgcctccagtttgtcatgtacctgaaacggttttacaaatcaaacactagacaactagagttgttatgtcatgtccttcattttttagcaaatcaaaca 42365782  T
Q  300 cac 302  Q
    |||    
T  42365783 cac 42365785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 35114899 - 35114976
Alignment:
Q  209 agtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcattttt 286  Q
    |||||||| ||| | ||||| |||| ||||||||||| |||| | ||||| ||||||| ||||||||| |||||||||    
T  35114899 agtttgtcctgtacctgaaacagttttacaaatcaaacactagacaactagagttgtcctgtcttgtccttcattttt 35114976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 41366129 - 41366050
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaa 245  Q
    |||||| |||||||||||| |||||||  ||||| |||||| ||||||||| ||||| |||||  |||  ||||||||||    
T  41366129 gtgagggacaaaaatttcagtttttgtcctatctcttgcctccagtttgtcatgtccctgaaactgtttcacaaatcaaa 41366050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 4641627 - 4641705
Alignment:
Q  208 cagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcattttt 286  Q
    ||||||||||||| | ||||| |||| ||||||||||| |||  | ||||||||||||  |||||| || |||||||||    
T  4641627 cagtttgtcttgtacctgaaacagttttacaaatcaaacactgaacaactaaagttgttctgtcttttccttcattttt 4641705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 31194023 - 31193950
Alignment:
Q  230 agttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcattttt-agcatatcaaacacac 302  Q
    |||| ||||||||||| | |||| |||| ||||||| |||| || || ||||||||| ||||||||||||||||    
T  31194023 agttttacaaatcaaacattatacaactgaagttgttatgttttatccttcattttttagcatatcaaacacac 31193950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 31212656 - 31212583
Alignment:
Q  230 agttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaacacac 302  Q
    |||| ||||||||||| | |||| |||| |||||||||||| || || |||| ||||||| |||||||||||||    
T  31212656 agttttacaaatcaaacattatacaactgaagttgtcatgttttatccttcattttttagtatatcaaacacac 31212583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 42706364 - 42706509
Alignment:
Q  100 ggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaatttttgttatatct 199  Q
    |||||||| |||| ||||||||||||  ||| || |||||| ||  ||| |||| ||| |  ||| |||||| |||||||| | | |||||||  ||||     
T  42706364 ggacaaaatgctattttggtattttagacaacttgtatgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcttatcc 42706463  T
Q  200 attgccttcagtttgtcttgtccatgaaatagttctacaaatcaaa 245  Q
     |||||| ||||||||| ||| | ||||| |||| |||||||||||    
T  42706464 cttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 42706509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 298
Target Start/End: Original strand, 44284696 - 44284833
Alignment:
Q  162 tttagtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaag 261  Q
    |||||||||| |||||||| | | |||||||  | ||  |||||| ||||||||||||| | ||||| |||| ||||||||||| |||  | ||||  ||    
T  44284696 tttagtgagggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactgaacaactctag 44284795  T
Q  262 ttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
    ||||  |||| |||| |||| ||||||||| |||||||    
T  44284796 ttgttctgtcatgtccttcattttttagcaaatcaaac 44284833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 303
Target Start/End: Original strand, 1601171 - 1601388
Alignment:
Q  84 ttgtacaatttgtggtggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttc 183  Q
    |||||| |||| |||||||||||| |||| ||||||||||||  ||| || |||||| ||  ||| |||| ||| |  ||| |||||| ||||||||       
T  1601171 ttgtacgatttttggtggacaaaatgctattttggtattttagacaacttgtatgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatg-- 1601268  T
Q  184 aatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcatt 283  Q
    | |||||||| ||||  |||||| ||||||||| ||| | |||||  ||| ||||||||||| |||  | ||||||||||||  |||| |||  ||||||    
T  1601269 agtttttgttctatcccttgcctccagtttgtcctgtacctgaaaccgttttacaaatcaaacactgaacaactaaagttgttctgtcatgttcttcatt 1601368  T
Q  284 tttagcatatcaaacacact 303  Q
    ||||||| ||||||| ||||    
T  1601369 tttagcaaatcaaacgcact 1601388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 298
Target Start/End: Original strand, 39792894 - 39793019
Alignment:
Q  173 acaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtct 272  Q
    |||| ||||||||||||||| |||||| ||| || || ||| |||||||| | ||| |||| | ||||||||| ||| || |||  |||||||||| ||     
T  39792894 acaagaatttcaatttttgtcatatcttttgtctccaatttatcttgtccctaaaacagttttgcaaatcaaacactgtacaacctaagttgtcatttca 39792993  T
Q  273 tgtctttcatttttagcatatcaaac 298  Q
    |||| | ||||||||||| |||||||    
T  39792994 tgtcctccatttttagcaaatcaaac 39793019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 30798933 - 30798826
Alignment:
Q  18 agaacaacacaatacaagatataacaataaatgacaatgttttgtggtattgaatgatttatggtcttgtacaatttgtggtggacaaaaagctactttg 117  Q
    |||||| ||||| |||||| | ||||||| || ||||  |||| || |||||||| |||| ||||||| ||| |||| |||||||||| || ||| ||||    
T  30798933 agaacatcacaaaacaagacagaacaatatataacaaaattttatgatattgaataatttttggtcttatacgatttttggtggacaacaaactattttg 30798834  T
Q  118 gtatttta 125  Q
    ||||||||    
T  30798833 gtatttta 30798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 504560 - 504429
Alignment:
Q  91 atttgtggtggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaattttt 190  Q
    |||| ||||| ||||||||||||||||||||||||  ||| || |||||| ||  |||  ||| |||||  |||||||||  |||||| ||||| |||||    
T  504560 atttttggtgaacaaaaagctactttggtattttagacaacttctatgtgggacaaaaaattgtgttatggtttagtgagagacaaaattttcagttttt 504461  T
Q  191 gttatatctattgccttcagtttgtcttgtcc 222  Q
    ||  | ||  ||||||  ||||||||||||||    
T  504460 gtgttgtcccttgcctcaagtttgtcttgtcc 504429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 6029395 - 6029316
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaa 245  Q
    |||||| |||||||||||| |||||||  | ||  |||||||||||||||  ||||| ||||| |||| |||||||||||    
T  6029395 gtgagggacaaaaatttcagtttttgtcctgtcccttgccttcagtttgttctgtccctgaaacagttttacaaatcaaa 6029316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 298
Target Start/End: Complemental strand, 45491035 - 45490836
Alignment:
Q  100 ggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaatttttgttatatct 199  Q
    |||||||| |||| ||||||||||||  ||| || || ||| ||  ||| |||| ||| |  ||| |||||| |||||||| | | ||||||| || ||     
T  45491035 ggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcatgtcc 45490936  T
Q  200 attgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcat-ttttagcatatcaaac 298  Q
     |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||| | ||||  |||| |||||||||| |||||||| |||||||    
T  45490935 cttgcctccagtttgtcctgtacttgaaacagttttacaaatcaaacactggacaactagaattgttctgtcctgtctttcattttttagcaaatcaaac 45490836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 286
Target Start/End: Complemental strand, 26118375 - 26118189
Alignment:
Q  100 ggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaatttttgttatatct 199  Q
    |||||||| |||| ||||||||||||  ||| || || ||| ||  ||| |||| | | | |||| |||||| |||||||| | | |||||||  | ||     
T  26118375 ggacaaaatgctattttggtattttagacaacttttacgtgggacaaaaagttgtgctgtgatttggtgagggacaaaaatatgagtttttgtcctgtcc 26118276  T
Q  200 attgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcattttt 286  Q
     |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||| |||||| ||||| |||| |||||||||    
T  26118275 tttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactagagttgttatgtcatgtccttcattttt 26118189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 7146909 - 7146977
Alignment:
Q  235 tacaaatcaaaaactataaaactaaagttgtcatgtcttgt-ctttcatttttagcatatcaaacacac 302  Q
    ||||||||||| |||||| |||| ||||||| ||||||| | |||| |||||||||  |||||||||||    
T  7146909 tacaaatcaaacactatacaactgaagttgttatgtcttatcctttaatttttagctgatcaaacacac 7146977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 298
Target Start/End: Complemental strand, 42512863 - 42512731
Alignment:
Q  167 tgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtc 266  Q
    ||||| |||||||| ||| |||||||  | ||| |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | |||| |||||||     
T  42512863 tgaggcacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgtt 42512764  T
Q  267 atgtcttgt-ctttcatttttagcatatcaaac 298  Q
     |||| ||| ||||  ||||||||| |||||||    
T  42512763 ctgtcctgtcctttattttttagcaaatcaaac 42512731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 51703258 - 51703138
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    ||||||||||||||| | | |||||||| | ||  ||||||||||||| || ||| | ||||| | || ||||||||||| |||  | || || ||||||    
T  51703258 gtgaggaacaaaaatatgagtttttgttctgtcccttgccttcagtttatcctgtacttgaaacaattttacaaatcaaacactggacaattagagttgt 51703159  T
Q  266 catgtcttgtctttcattttt 286  Q
      ||||||||| |||||||||    
T  51703158 tctgtcttgtccttcattttt 51703138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 298
Target Start/End: Complemental strand, 50386468 - 50386336
Alignment:
Q  167 tgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtc 266  Q
    ||||| |||||||| ||||||||||| || ||| |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||| | ||||  ||||||     
T  50386468 tgaggcacaaaaatatcaatttttgtcatgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactagacaactggagttgtt 50386369  T
Q  267 atgtcttgtctttca-tttttagcatatcaaac 298  Q
     |||| |||| |||| ||||||||| |||||||    
T  50386368 ctgtcctgtccttcattttttagcaaatcaaac 50386336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 39052817 - 39052718
Alignment:
Q  200 attgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcat-ttttagcatatcaaac 298  Q
    ||||||| ||||||||| ||| | ||||| |||| ||||||||||| |||| | ||||| ||||||  ||||||||||||||| |||||||| |||||||    
T  39052817 attgcctccagtttgtcctgtgcctgaaacagttttacaaatcaaacactagacaactagagttgttttgtcttgtctttcattttttagcaaatcaaac 39052718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 24571388 - 24571490
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaaca 299  Q
    |||||| ||||||||||||| | ||||| |||| ||||||||||| |||  | ||||| ||||||  |||| |||| |||| ||||||||| ||||||||    
T  24571388 ttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactggacaactagagttgttttgtcctgtccttcattttttagcaaatcaaaca 24571487  T
Q  300 cac 302  Q
    |||    
T  24571488 cac 24571490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 1344685 - 1344585
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaaca 299  Q
    |||||| ||||||||| ||| | |||||||||| ||||||||||| |||  | ||||| ||||||  |||| |||| |||| ||||||||| ||||||||    
T  1344685 ttgcctccagtttgtcctgtacctgaaatagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttcattttttagcaaatcaaaca 1344586  T
Q  300 c 300  Q
    |    
T  1344585 c 1344585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 44000198 - 44000290
Alignment:
Q  31 acaagatataacaataaatgacaatgttttgtggtattgaatgatttatggtcttgtacaatttgtggtggacaaaaagctactttggtattt 123  Q
    |||||| | ||||||| | |||||  |||| ||||||||||| |||| ||||||| ||| |||| ||||||||||||| ||| ||| ||||||    
T  44000198 acaagacaaaacaatacaagacaaacttttatggtattgaataatttttggtcttatacgatttttggtggacaaaaaactatttttgtattt 44000290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 8067179 - 8067111
Alignment:
Q  57 ttttgtggtattgaatgatttatggtcttgtacaatttgtggtggacaaaaagctactttggtatttta 125  Q
    |||| |||||||||||||||| || |||| ||  |||| | ||||||||||||||| |||| |||||||    
T  8067179 ttttatggtattgaatgatttttgatcttatatgatttctagtggacaaaaagctattttgatatttta 8067111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 298
Target Start/End: Complemental strand, 31883034 - 31882902
Alignment:
Q  167 tgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtc 266  Q
    ||||| |||||||| ||| |||||||  | ||| |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||  ||||||     
T  31883034 tgaggcacaaaaatatcagtttttgtcgtgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactggagttgtt 31882935  T
Q  267 atgtcttgtctttca-tttttagcatatcaaac 298  Q
     |||| |||| |||| ||||||||| |||||||    
T  31882934 ctgtcatgtccttcattttttagcaaatcaaac 31882902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 298
Target Start/End: Complemental strand, 41683065 - 41682933
Alignment:
Q  167 tgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtc 266  Q
    ||||| |||||| | ||| |||||||  | ||| |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | |||| |||||||     
T  41683065 tgagggacaaaagtatcagtttttgtcttgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgtt 41682966  T
Q  267 atgtcttgtctttca-tttttagcatatcaaac 298  Q
     |||| |||| |||| ||||||||| |||||||    
T  41682965 ttgtcctgtccttcattttttagcaaatcaaac 41682933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 49748924 - 49748840
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaacta 250  Q
    |||||| |||||||| ||| ||||||| || ||  |||||| ||||||||| ||| | ||||| |||| ||||||||||| ||||    
T  49748924 gtgagggacaaaaatatcagtttttgtcatgtcctttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacacta 49748840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 286
Target Start/End: Complemental strand, 50729547 - 50729434
Alignment:
Q  173 acaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtct 272  Q
    |||||||||||| ||||||| || ||  |||||| ||||||||  ||||| ||||| |||| ||||||||||| |||  | |||| |||||||  |||||    
T  50729547 acaaaaatttcagtttttgtcatgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatcaaacactggacaactgaagttgttctgtct 50729448  T
Q  273 tgtctttcattttt 286  Q
    |||| |||||||||    
T  50729447 tgtccttcattttt 50729434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 286
Target Start/End: Original strand, 3649710 - 3649830
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||||| | |||||||  | ||  |||||||||||||||  ||||| ||||| |||| ||||||||||| |||| | ||||  ||||||    
T  3649710 gtgagggacaaaaattttagtttttgtcctgtcccttgccttcagtttgttctgtccctgaaacagttttacaaatcaaacactagacaactggagttgt 3649809  T
Q  266 catgtcttgtctttcattttt 286  Q
      ||||||||| |||||||||    
T  3649810 tctgtcttgtccttcattttt 3649830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 287
Target Start/End: Original strand, 37865761 - 37865948
Alignment:
Q  100 ggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaatttttgttatatct 199  Q
    |||||||| |||| ||||||||||||  ||| || ||  || ||  ||| |||| ||| | |||| |||||| |||||||| | | ||||||| || |||    
T  37865761 ggacaaaatgctattttggtattttagacaacttgtacatgggacaaaaagttgtgttgtgatttggtgagggacaaaaatatgagtttttgtcatgtct 37865860  T
Q  200 attgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcattttta 287  Q
     |||||| ||| ||||| ||| | ||||| |||| ||||||||||| |||  | ||||| |||||| ||||| |||| ||||||||||    
T  37865861 cttgcctccagattgtcatgtacctgaaacagttttacaaatcaaacactggacaactagagttgttatgtcgtgtccttcattttta 37865948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 286
Target Start/End: Complemental strand, 20518039 - 20517914
Alignment:
Q  161 atttagtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaa 260  Q
    |||| |||||| |||||||| | | |||||||  | ||| |||||| ||||||||||||| | ||||| |||| ||||||||||| |||  | ||||| |    
T  20518039 atttggtgagggacaaaaatatgactttttgtcctgtctcttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactgaacaactaga 20517940  T
Q  261 gttgtcatgtcttgtctttcattttt 286  Q
    |||||  |||| |||| |||||||||    
T  20517939 gttgttctgtcctgtccttcattttt 20517914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 22318396 - 22318312
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaacta 250  Q
    |||||| ||||||||||||| ||||||  | ||| |||||||||||||||  ||||| | ||| |||| ||||||||||| ||||    
T  22318396 gtgagggacaaaaatttcaaattttgtcctgtctcttgccttcagtttgttctgtccctaaaacagttttacaaatcaaacacta 22318312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 286
Target Start/End: Original strand, 39078735 - 39078855
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| ||||||||||||  ||||||  ||||| |||||| ||||||||  ||||| ||||| |||| ||||||||||| |||  | ||||  ||||||    
T  39078735 gtgagggacaaaaatttcaggttttgtcctatctcttgcctccagtttgttctgtccctgaaacagttttacaaatcaaacactggacaactggagttgt 39078834  T
Q  266 catgtcttgtctttcattttt 286  Q
      |||| |||| |||||||||    
T  39078835 tctgtcatgtccttcattttt 39078855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 298
Target Start/End: Complemental strand, 44649175 - 44649043
Alignment:
Q  167 tgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtc 266  Q
    ||||| |||||||| ||| |||||||  | ||| |||||| ||||||||| ||| | ||||| |||| |||||||||||||||  | ||||  ||||||     
T  44649175 tgagggacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaaactggataactggagttgtt 44649076  T
Q  267 atgtcttgtctttca-tttttagcatatcaaac 298  Q
     |||| |||| |||| ||||||||| |||||||    
T  44649075 ctgtcctgtccttcattttttagcaaatcaaac 44649043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 298
Target Start/End: Complemental strand, 50178503 - 50178371
Alignment:
Q  167 tgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtc 266  Q
    ||||| |||||||| ||| |||||||  | ||| |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | |||| |||||||     
T  50178503 tgaggcacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgtt 50178404  T
Q  267 atgtcttgtctttca-tttttagcatatcaaac 298  Q
     |||| |||| |||| ||||||||| |||||||    
T  50178403 ctgtcctgtccttcattttttagcaaatcaaac 50178371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 26083413 - 26083512
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||||||| ||||||| || ||  |||||| ||||||||  ||||| ||||| | || ||||||||||| |||| | |||| |||||||    
T  26083413 gtgagggacaaaaatttcagtttttgtcatgtcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaacactaaacaactgaagttgt 26083512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 298
Target Start/End: Original strand, 36885940 - 36886139
Alignment:
Q  100 ggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaatttttgttatatct 199  Q
    |||||||| |||| || |||||||||  |||||| || ||| ||| ||| |||| | | |  ||| |||||| |||||||| | | |||||||  | ||     
T  36885940 ggacaaaatgctatttaggtattttagacaatttgtacgtgggataaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcc 36886039  T
Q  200 attgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgt-ctttcatttttagcatatcaaac 298  Q
     |||||| ||||||||||||| | ||||| |||| ||||||||||| |||  | ||||| ||||||  |||||||| ||||  ||||||||| |||||||    
T  36886040 cttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactggacaactagagttgttttgtcttgtcctttattttttagcaaatcaaac 36886139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 32181380 - 32181470
Alignment:
Q  209 agtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
    |||||||| ||| | ||||| |||| ||||||||||| |||  | |||||||||||||||||| | || |||| ||||||||| |||||||    
T  32181380 agtttgtcctgtacttgaaacagttttacaaatcaaacactggacaactaaagttgtcatgtcctatccttcattttttagcaaatcaaac 32181470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 50727890 - 50727792
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
    |||||||||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||| ||||||  |||| |||| |||| ||||||||| |||||||    
T  50727890 ttgccttcagtttgtcatgtacctgaaacagttttacaaatcaaacacttgacaactagagttgttctgtcatgtccttcattttttagcaaatcaaac 50727792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 50735904 - 50735806
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
    |||||||||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||| ||||||  |||| |||| |||| ||||||||| |||||||    
T  50735904 ttgccttcagtttgtcatgtacctgaaacagttttacaaatcaaacacttgacaactagagttgttctgtcatgtccttcattttttagcaaatcaaac 50735806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 31445800 - 31445751
Alignment:
Q  254 aactaaagttgtcatgtcttgtctttcatttttag-catatcaaacacac 302  Q
    ||||| |||||||||||| |||| ||||||||||| ||||||||||||||    
T  31445800 aactagagttgtcatgtcatgtccttcatttttagtcatatcaaacacac 31445751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 42772905 - 42772982
Alignment:
Q  209 agtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcattttt 286  Q
    |||||||| ||| | ||||| | || ||||||||||| |||  |||||||||||||| ||||| |||| |||||||||    
T  42772905 agtttgtcatgtacctgaaacaattttacaaatcaaacacttgaaaactaaagttgttatgtcatgtcattcattttt 42772982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 44355870 - 44355730
Alignment:
Q  162 tttagtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaag 261  Q
    |||| ||||| ||||||||||||||||||||  | ||| || ||| ||||||||| | ||| | ||| |||| ||||||||||| || | | ||||| |     
T  44355870 tttaatgagggacaaaaatttcaatttttgtcctctctcttacctccagtttgtcctatccctaaaacagtt-tacaaatcaaacaccacacaactagat 44355772  T
Q  262 ttgtcatgtcttgtctttca-tttttagcatatcaaacacac 302  Q
    ||||||| || | || |||| |||||| ||||||||||||||    
T  44355771 ttgtcatatcatatccttcattttttaacatatcaaacacac 44355730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 7001780 - 7001868
Alignment:
Q  18 agaacaacacaatacaagatataacaataaatgacaatgttttgtggtattgaatgatttatggtcttgtacaatttgtggtggacaaa 106  Q
    |||||| ||||| |||||| | ||||||| | |||||  |||| ||| ||||||| |||| ||||||| ||| |||| |||||||||||    
T  7001780 agaacatcacaacacaagacagaacaatacaggacaaatttttatggcattgaataatttttggtcttatacgatttttggtggacaaa 7001868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 9435371 - 9435431
Alignment:
Q  65 tattgaatgatttatggtcttgtacaatttgtggtggacaaaaagctactttggtatttta 125  Q
    |||||||| |||| ||||||| ||| |||| |||| |||||||||||| ||| ||||||||    
T  9435371 tattgaattatttttggtcttataccatttttggtagacaaaaagctatttttgtatttta 9435431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 20802543 - 20802423
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||| | | |||||||  | ||| |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||||||||||    
T  20802543 gtgagggacaaaaatatgagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggataactaaagttgt 20802444  T
Q  266 catgtcttgtctttcattttt 286  Q
      |||| | || |||||||||    
T  20802443 tctgtcctatccttcattttt 20802423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 298
Target Start/End: Complemental strand, 36743700 - 36743568
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||| | ||||||||| || ||  |||||| ||||||||| ||| | ||||| |||| ||||| ||||| |||  | ||||| ||||||    
T  36743700 gtgagggacaaaaatatgaatttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaattcaaacactgaacaactagagttgt 36743601  T
Q  266 catgtcttgtctttcatttttagcatatcaaac 298  Q
      |||  | || ||||||||||||| |||||||    
T  36743600 tttgttatatccttcatttttagcaaatcaaac 36743568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 53200655 - 53200535
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||||||| ||||||| || |   |||||| |||||| || ||||  ||||| |||| | ||||||||| |||| | | || ||||| |    
T  53200655 gtgagggacaaaaatttcagtttttgtcatgttccttgcctccagtttatcctgtctctgaaacagttttgcaaatcaaacactaaacagctgaagttat 53200556  T
Q  266 catgtcttgtctttcattttt 286  Q
     |||||||||| |||||||||    
T  53200555 tatgtcttgtccttcattttt 53200535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 31770581 - 31770483
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgt-ctttcatttttagcatatcaaac 298  Q
    |||||| ||||||||||||| ||||||| |||| ||||||||||| |||  | ||||| |||||| ||||| ||| ||||  ||||||||| |||||||    
T  31770581 ttgcctccagtttgtcttgtacatgaaacagttttacaaatcaaacactgaacaactagagttgttatgtcatgtcctttattttttagcaaatcaaac 31770483  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 286
Target Start/End: Complemental strand, 18470446 - 18470333
Alignment:
Q  173 acaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtct 272  Q
    |||||||||||| |||||||  | ||  |||||||||||||||  ||||| ||||| |||| ||||||||||| |||  | ||||  ||||||  |||||    
T  18470446 acaaaaatttcagtttttgtcttgtcccttgccttcagtttgttctgtccctgaaacagttttacaaatcaaacactggataactggagttgttctgtct 18470347  T
Q  273 tgtctttcattttt 286  Q
    |||| |||||||||    
T  18470346 tgtccttcattttt 18470333  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 286
Target Start/End: Complemental strand, 41790562 - 41790368
Alignment:
Q  91 atttgtggtggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaattttt 190  Q
    |||| ||| |||||||| | || ||| ||||||||  |||||| || ||||||  ||| |||| ||| |  ||| |||||| |||||||| | | |||||    
T  41790562 atttttgggggacaaaatgttattttagtattttagacaatttgtacgtgagacaaaaagttgtgttgtggtttggtgagggacaaaaatatgagttttt 41790463  T
Q  191 gttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttcattttt 286  Q
    ||  | | |||||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||||| ||||  |||| ||||||||||||||    
T  41790462 gtcctgtttattgcctccagtttgtcctgtac-tgaaacagttttacaaatcaaacactggacaactaaaattgttctgtcctgtctttcattttt 41790368  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 4689688 - 4689590
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
    |||||| ||||||||||||| | ||||| |||| ||||||||||| |||  | |||| |||||||  |||| |||| |||| ||||||||| |||||||    
T  4689688 ttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactggacaactgaagttgttctgtcatgtccttcattttttagcaaatcaaac 4689590  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 298
Target Start/End: Original strand, 39918613 - 39918711
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
    |||||| |||||||||||||   ||||| |||| ||||||||||| |||  | ||||| ||||||| |||| |||| |||| ||||||||| |||||||    
T  39918613 ttgcctccagtttgtcttgtatctgaaacagttttacaaatcaaacactggacaactagagttgtcttgtcctgtccttcattttttagcaaatcaaac 39918711  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 298
Target Start/End: Original strand, 41459694 - 41459792
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
    |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||| | ||||| ||||||  |||| |||| |||| ||||||||| |||||||    
T  41459694 ttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaatactaaacaactagagttgttctgtcatgtccttcattttttagcaaatcaaac 41459792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 298
Target Start/End: Original strand, 11963412 - 11963545
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||| | | ||||||| || ||  |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||| ||||||    
T  11963412 gtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactagagttgt 11963511  T
Q  266 catgtcttgtctttca-tttttagcatatcaaac 298  Q
      |||| |||| |||| ||||||||| |||||||    
T  11963512 tctgtcctgtccttcattttttagcaaatcaaac 11963545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 32528828 - 32528924
Alignment:
Q  208 cagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaacacact 303  Q
    ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||| ||||||| |||| |||| |||| ||||||||| ||||||| ||||    
T  32528828 cagtttgtcctgtacctgaaacagttttacaaatcaaacactgaacaactagagttgtcctgtcatgtccttcattttttagcaaatcaaacgcact 32528924  T

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Target: scaffold0957 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 2476 - 2388
Alignment:
Q  211 tttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttc-atttttagcatatcaaac 298  Q
    |||||||||| | ||||| |||| ||||||||||| |||  | ||||| |||||| |||||||||| ||| |||||||||| |||||||    
T  2476 tttgtcttgtacctgaaacagttttacaaatcaaacactgaacaactagagttgttatgtcttgtccttcaatttttagcaaatcaaac 2388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 1668 - 1548
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||||||| |||||||  | ||  |||||| ||||||||| | ||| ||||| |||| ||||||||||| |||  | |||| |||||||    
T  1668 gtgagggacaaaaatttcagtttttgtcttgtcccttgcctccagtttgtcctatccttgaaacagttttacaaatcaaacactggagaactgaagttgt 1569  T
Q  266 catgtcttgtctttcattttt 286  Q
      ||| ||||| |||||||||    
T  1568 tctgttttgtccttcattttt 1548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 298
Target Start/End: Original strand, 21784871 - 21785079
Alignment:
Q  91 atttgtggtggacaaaaagctactttggtattttacgcaatttatatgtgagatcaaatgttgcgttatcatttagtgaggaacaaaaatttcaattttt 190  Q
    |||| ||| |||||||| |||| ||||||||||||  ||| || || ||| ||  ||| |||| ||| |  ||| |||||| |||||||| | | |||||    
T  21784871 atttttggaggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatatgagttttt 21784970  T
Q  191 gttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagc 289  Q
    ||  | ||| |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||| ||||||  |||| |||| |||| ||||||||    
T  21784971 gtcctgtctcttgcctccagtttgtcatgtgcctgaaacagttttacaaatcaaacactgaacaactagagttgttctgtcatgtccttcattttttagc 21785070  T
Q  290 atatcaaac 298  Q
    | |||||||    
T  21785071 aaatcaaac 21785079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 43158671 - 43158573
Alignment:
Q  201 ttgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgtcatgtcttgtctttca-tttttagcatatcaaac 298  Q
    |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||| ||||||  ||||||||| |||| ||||||||| |||||||    
T  43158671 ttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactagagttgttctgtcttgtccttcattttttagcaaatcaaac 43158573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 298
Target Start/End: Original strand, 47953265 - 47953398
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||| | | ||||||| || ||  |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||  | ||||| ||||||    
T  47953265 gtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactagagttgt 47953364  T
Q  266 catgtcttgtctttca-tttttagcatatcaaac 298  Q
      |||| |||| |||| ||||||||| |||||||    
T  47953365 tctgtcctgtcgttcattttttagcaaatcaaac 47953398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 48699364 - 48699432
Alignment:
Q  57 ttttgtggtattgaatgatttatggtcttgtacaatttgtggtggacaaaaagctactttggtatttta 125  Q
    |||| ||||||||||||| || ||||||||||| |||| | ||||||| ||  ||| ||||||||||||    
T  48699364 ttttatggtattgaatgacttttggtcttgtacgattttttgtggacataagtctattttggtatttta 48699432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 13608 - 13537
Alignment:
Q  162 tttagtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagtt 233  Q
    |||||||||  ||| |||||||||||||||| || |||||||||| || |||||||| ||  ||||||||||    
T  13608 tttagtgagagacacaaatttcaatttttgtcatgtctattgcctccaatttgtcttctctctgaaatagtt 13537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 13712 - 13592
Alignment:
Q  166 gtgaggaacaaaaatttcaatttttgttatatctattgccttcagtttgtcttgtccatgaaatagttctacaaatcaaaaactataaaactaaagttgt 265  Q
    |||||| |||||||||||| |||||||  ||||  |||||| ||||||||  ||||| ||||| | || ||||||||||| |||  | ||||  ||||||    
T  13712 gtgagggacaaaaatttcagtttttgtcctatcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaacactggacaactggagttgt 13613  T
Q  266 catgtcttgtctttcattttt 286  Q
      |||| |||| |||||||||    
T  13612 tctgtcctgtccttcattttt 13592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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