View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_46 (Length: 334)
Name: NF8061_low_46
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 33 - 317
Target Start/End: Complemental strand, 48066395 - 48066119
Alignment:
| Q |
33 |
ttggaaatatatattgcagaatttcacgttttctcttatataaatttctctcgctagtgtaaacatttttagtagtaaagtaatgataaaactcgattaa |
132 |
Q |
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| T |
48066395 |
ttggaaatatatattgcagaatttcacgttttctcttatataaatttctctcgctagtgtaaacatttttagtagtaa-----tgataaaactcgattaa |
48066301 |
T |
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| Q |
133 |
atcgaggatgtttgggccattagaaaaatgttcactaggtatgtctggttaatcaagaccatacggatgagtagcgtcaactatggcagtagtagcaaca |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48066300 |
atcgaggatgtttgggccattagaaaaatgttcactaggtatgtctggttaatcaagaccatacggatgagtagcgtcaactatggcagtggtagcaaca |
48066201 |
T |
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| Q |
233 |
aaatcattgttaccaccactgtccactataaagaatctcccaaaacgaagaaatggttgagcataaaaccaaccaagcttgttat |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48066200 |
aaatcattgtta---ccactgtccactataaagaatctcccaaaacgaagaaatggttgagcataaaaccaaccaagcttattat |
48066119 |
T |
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