View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_49 (Length: 320)
Name: NF8061_low_49
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 35384232 - 35383948
Alignment:
| Q |
15 |
tgagaagaagtgcatgttaaaatgtgaagggtgtatctgcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaatnnnnnnncaaata |
114 |
Q |
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| T |
35384232 |
tgagaagaagtgcatgttaaaatgtaaagggtgtatatgcaattacacaatttaacgtaccaaataaaaatagtacttaccaccaataaaaaaacaaata |
35384133 |
T |
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| Q |
115 |
taacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagtgaacaaataaattg |
214 |
Q |
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| T |
35384132 |
taacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagggaacaaataaattg |
35384033 |
T |
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| Q |
215 |
aactatttgaattaaatttgagccctatagatcaagaatcatcatggtcattaaacttaaaggcctttgctaataccctagctgt |
299 |
Q |
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| T |
35384032 |
agctatttgaattaaatttgagccctatagatcaagaatcatcatggtcattaaacttaaaggcctttgctaataccctagctgt |
35383948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 35388079 - 35387865
Alignment:
| Q |
14 |
gtgagaagaagtgcatgttaaaatgtgaagggtgtatctgcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaatnnnnnnncaaat |
113 |
Q |
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| T |
35388079 |
gtgagaagaaatgcatgttcaaatgtgaagggtgtatcagcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaataaaaa---aaat |
35387983 |
T |
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| Q |
114 |
ataacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagtgaacaaataaatt |
213 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| | ||||||||||| |
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| T |
35387982 |
ataacagggaataaattgaattaaataaaatcttgtataagctaaaggtattgcaacatttctgaaacatagtacattttgcaaaggggacaaataaatt |
35387883 |
T |
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| Q |
214 |
gaactatttgaattaaat |
231 |
Q |
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| T |
35387882 |
gagctatttgaattaaat |
35387865 |
T |
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