View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8061_low_51 (Length: 315)
Name: NF8061_low_51
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_51 |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 30719306 - 30719010
Alignment:
| Q |
1 |
ctgccgaaacgtcaatggctcttctcctgtactgtgcgcccctttataacaattgccaatccttctttttattctcgggtcaaccaaggaaattttgggt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| |
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| T |
30719306 |
ctgccgaaacgtgaatggctcttctcctgtactgtgcgcccctttataacaattgtcaatccttctttttattctcgggtcaaccaagacaaatttgggt |
30719207 |
T |
|
| Q |
101 |
caaaggcccatttcattattttctcctttttcacttatgcatcacgcacgttgcttgaatatatatgtaaggagacatgctagtttttctctatttcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30719206 |
caaaggcccatttcattattttctcctttctcacttatgcatcacg----ttgcttgaatatatatgtaaggagacatgctagtttttctctatttcaaa |
30719111 |
T |
|
| Q |
201 |
gccaatgaaacacattttcttttcttcaatggtctgccacgttgtggctctttttgttggtcatttagccaccattagtactaatagatgataataatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719110 |
gccaatgaaacacattttcttttcttcaatggtctgccacgttgtggctctttttgttggtcatttagccaccattagtactaatagatgataataatat |
30719011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 28117369 - 28117070
Alignment:
| Q |
1 |
ctgccgaaacgtcaatggctcttctcctgtactgtgcgcccctttataacaattgccaatccttctttttattctcgggtcaaccaaggaaattttgggt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
28117369 |
ctgccgaaacgtgaatggctcttctcttgtactgtgcacccttttataacaattgccaatccttctttttattctcgggtcaaccaaggcaaatttgggt |
28117270 |
T |
|
| Q |
101 |
caaaggcccatttcattattttctcctttttcacttatgcatcacgcacgttgcttgaatatatatgtaaggagacatgctagtttttctctatttcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28117269 |
caaaggcccatttcattattttctcctttctcacttatgcatcacg----ttgcttgaatatatatgtaaggagacatgctagtttttctctatttcaaa |
28117174 |
T |
|
| Q |
201 |
gccaatgaaacacattttcttttcttcaatggtctgccacgttgtggctctttttgttggtcatttagccaccatt---agtactaatagatgataataa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28117173 |
gccaatgaaacacattttcttttcttcaatggtctgccacgttgtggctctttttgttggtcatttagccaccattagtagtactaatagatgataataa |
28117074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 9314374 - 9314666
Alignment:
| Q |
1 |
ctgccgaaacgtcaatggctcttctcctgtactgtgcgcccctttataacaattgccaatccttctttttattctcgggtcaaccaaggaaattttgggt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
9314374 |
ctgccgaaacgtgaatggctcttctcctgtactctgcgcccctttataacaattgccaatccttctttttattctcgggtcaaccaaggcaaatttgggt |
9314473 |
T |
|
| Q |
101 |
caaaggcccatttcattattttctcctttttcacttatgcatcacgcacgttgcttgaatat----atatgtaaggagacatgctagtttttctctattt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
9314474 |
caaaggcccatttcattattttctcctttctcacttatgcatcacg----ttgcttgaatatatatatatgtaaggagacatgctagtttttctctattt |
9314569 |
T |
|
| Q |
197 |
caaagccaatgaaacacattttcttttcttcaatggtctgccacgttgtggctctttttgttggtcatttagccaccattagtactaatagatgata |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9314570 |
caaagccaatgaaacacattttcttttcttcaatggtctgccacgttgtggctctttttgttggtcatttagccaccattagtacaaatagatgata |
9314666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 22463944 - 22463645
Alignment:
| Q |
1 |
ctgccgaaacgtcaatggctcttctcctgtactgtgcgcccctttataacaattgccaatccttctttttattctcgggtcaaccaaggaaattttgggt |
100 |
Q |
| |
|
||||||||| || ||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| |
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|
| T |
22463944 |
ctgccgaaatgtgaatggctcttctcttgtactgtgctcccttttataacaattgccaatccttcttttaattctcgggtcaaccaaggcaaatttgggt |
22463845 |
T |
|
| Q |
101 |
caaaggcccatttcattattttctcctttttcacttatgcatcacgcacgttgcttgaatatatatgtaaggagacatgctagtttttctctatttcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22463844 |
caaaggcccatttcattattttctcctttctcacttatgcatcacg----ttgcttgaatatatatgtaaggagacatgctagtttttctctatttcaaa |
22463749 |
T |
|
| Q |
201 |
gccaatgaaacacattttcttttcttcaatggtctgccacgttgtggctctttttgttggtcatttagccaccatt---agtactaatagatgataataa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22463748 |
gccaatgaaacacattttcttttcttcaatggtctgccacgttgtggctctttttgttggtcatttagccaccattagtagtactaatagatgataataa |
22463649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 52 - 301
Target Start/End: Complemental strand, 23149281 - 23149036
Alignment:
| Q |
52 |
attgccaatccttctttttattctcgggtcaaccaaggaaattttgggtcaaaggcccatttcattattttctcctttttcacttatgcatcacgcacgt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||| |||||| | |
|
|
| T |
23149281 |
attgccaatccttctttttattctcgggtcaaccaaggcaaatttgggtcaaaggcccattccattattttctcctttctcacttatgtatcacg----t |
23149186 |
T |
|
| Q |
152 |
tgcttgaatatatatgtaaggagacatgctagtttttctctatttcaaagccaatgaaacacattttcttttcttcaatggtctgccacgttgtggctct |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23149185 |
tgcttgaatatatatgtaaggagacatgctagtttttctctacttcaaagccaatgaaacacattttcttttcttcaatggtctgccacgttgtggctct |
23149086 |
T |
|
| Q |
252 |
ttttgttggtcatttagccaccattagtactaatagatgataataatata |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23149085 |
ttttgttggtcatttagccaccattagtactaatagatgataataatata |
23149036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 10385450 - 10385161
Alignment:
| Q |
14 |
aatggctcttctcctgtactgtgcgcc-cctttataacaattgccaatccttctttttattctcgggtcaaccaaggaaattttgggtcaaaggcccatt |
112 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
10385450 |
aatggctcttctccagtactgtgtgcagcctttataacaattgtcaatccttctttttattctcgggtcaacaaaggcaaatttgggtcaaaggcccatt |
10385351 |
T |
|
| Q |
113 |
tcattattttctcctttttcacttatgcatcacgcacgttgcttgaatatatatgtaaggagacatgctagtttttctctatttcaaagccaatgaaaca |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10385350 |
ccattattttctcctttctcacttatgcatcacg----ttgcttgaatatatatgtaaggagacatgctagtttttctctatttcaaagccaatgaaaca |
10385255 |
T |
|
| Q |
213 |
cattttcttttcttcaatggtctgccacgttgtggctctttttgttggtcatttagccaccattagtactaatagatgataataatatattctt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
10385254 |
cattttcttttcttcaatggtctgccacgttgtggctctttttgttggtcatttagccaccattagtactactacatgataataatatactctt |
10385161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 2452823 - 2452542
Alignment:
| Q |
14 |
aatggctcttctcctgtactgtgcgcccctttataacaattgccaatccttctttttattctcgggtcaaccaaggaaattttgggtcaaaggcccattt |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2452823 |
aatggctcttctcctgtactgtgcgagcctttataacaattgccaatccttctttttattctcgggtcaaccaaggcaaatttgggtcaaaggcccattc |
2452724 |
T |
|
| Q |
114 |
cattattttctcctttttcacttatgcatcacgcacgttgcttgaatatatatgtaaggagacatgctagtttttctctatttcaaagccaatgaaacac |
213 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2452723 |
cattattttctcctttctcacttatgcatcacg----ttgcttgaatatatatgtaaggagacatgctagtttttctctatttcaaagccaatgaaacac |
2452628 |
T |
|
| Q |
214 |
attttcttttcttcaatggtctgccacgttgtggctctttttgttggtcatttagccaccattagtactaatagatgataataatatattctt |
306 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
2452627 |
attttcttttcttcaatggtgtgccacgttgtggctctttttgttggtcatttagcc-------gtactaatagatgataataatatactctt |
2452542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6780 - 6729
Alignment:
| Q |
1 |
ctgccgaaacgtcaatggctcttctcctgtactgtgcgcccctttataacaa |
52 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6780 |
ctgccaaaacgttaatggctcttctcctgtactgtgcgcccctttataacaa |
6729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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