View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_53 (Length: 306)
Name: NF8061_low_53
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 3427554 - 3427277
Alignment:
| Q |
13 |
aatattaattgttgtccaccaaattccacaaaaatcataaattacaaaattccttcatcaaatcaacccttaagggtaagacaagcagcacatttagtca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427554 |
aatattaattgttgtccaccaaattccacaaaaatcataaattacaaaattccttcatcaaatcaacccttaagggtaagacaagcagcacatttagtca |
3427455 |
T |
|
| Q |
113 |
atgatgaatatctacaaaagtacaaaaaagccattgaactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||| |
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| T |
3427454 |
atgatgaatatctacaaaagtacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtagtttcatacaacaagcaaacatccattg |
3427355 |
T |
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| Q |
213 |
tgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttt |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
3427354 |
tgcttattgtgatggtgcatattcccaagttggtttccctaatcttgatcttcaagttcataattcttggctcttttt |
3427277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 3433741 - 3433468
Alignment:
| Q |
17 |
ttaattgttgtccaccaaattccacaaaaatcataaattacaaaattccttcatcaaatcaacccttaagggtaagacaagcagcacatttagtcaatga |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| || |
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| T |
3433741 |
ttaattgttgtccaccaaattccacaaaaatcatagattacaaatttccttcatcaactcaacccttaagggtaagacaagcagcacatttggtcaacga |
3433642 |
T |
|
| Q |
117 |
tgaatatctacaaaagtacaaaaaagccattgaactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgct |
216 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| || ||||||||| |
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| T |
3433641 |
tgaatatctacaaaaatacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtaatttcatacaacaagcaaacatccattgtgct |
3433542 |
T |
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| Q |
217 |
tattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttt |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3433541 |
tattgtgatggtgcatattcccaagttggttttcctaatcttgatcttcaagttcatagttcttggctcttttt |
3433468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 11912055 - 11912332
Alignment:
| Q |
13 |
aatattaattgttgtccaccaaattccacaaaaatcataaattacaaaattccttcatcaaatcaacccttaagggtaagacaagcagcacatttagtca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | |
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| T |
11912055 |
aatattaattgttgtccaccaaattccacaaaaatcatagattacaaaattccttcatcaaatcaacccttaagggtaagacaagcagcaaatttggtta |
11912154 |
T |
|
| Q |
113 |
atgatgaatatctacaaaagtacaaaaaagccattgaactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattg |
212 |
Q |
| |
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|||| |||||||| ||||| ||||| ||||||||||| |||| |||||| ||||| |||| |||||||||||||||||||||||||||||| || ||||| |
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| T |
11912155 |
atgacgaatatcttcaaaaatacaagaaagccattgagctcacgaaagcattaccatccaatgatccacgtagtttcatacaacaagcaaacatccattg |
11912254 |
T |
|
| Q |
213 |
tgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11912255 |
tgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcataactcttggctcttttt |
11912332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 11896723 - 11896999
Alignment:
| Q |
14 |
atattaattgttgtccaccaaattccacaaaaatcataaattacaaaattccttcatcaaatcaacccttaagggtaagacaagcagcacatttagtcaa |
113 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||| |||||||| ||||| ||| || ||||||||||||||| ||||||||||||||||| ||||| |
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| T |
11896723 |
atattgattgttgtccaccaaaatccacaaaaatcatagattacaaatttcctccattaactcaacccttaagggttagacaagcagcacatttggtcaa |
11896822 |
T |
|
| Q |
114 |
tgatgaatatctacaaaagtacaaaaaagccattgaactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgt |
213 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| | || ||| |
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| T |
11896823 |
cgatgaatatcttcaaaaatacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtagtttcatgcaacaagcaaacgtccactgt |
11896922 |
T |
|
| Q |
214 |
gcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttt |
290 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
11896923 |
gcttattgtgatggtgcatattcccaagttggcttccctaaccttgatcttcaagttcatggctcttggctcttttt |
11896999 |
T |
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